miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00723;mir-448;AAPE01293616.1/2463-2573 59463:Myotis lucifugus
(little brown bat)
Length = 111
Score = 167 bits (84), Expect = 4e-41
Identities = 104/108 (96%), Gaps = 2/108 (1%)
Strand = Plus / Plus
Query: 4 gggaggttgaacatcctgcatagtgctgccaggaaatccctatttcata-taagaggggg 62
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||
Sbjct: 4 gggaggttgaacatcctgcatagtgctgccaggaaatccctattt-atactaagagtggg 62
Query: 63 ctggctggttgcatatgtaggatgtcccatctcccagcccacttcgtc 110
||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 63 ctggctggttgcatatgtaggatgtcccatctccctgcccacttcgtc 110
>RF00723;mir-448;ABRQ01383699.1/6043-6154 9813:Procavia capensis
(cape rock hyrax)
Length = 112
Score = 161 bits (81), Expect = 2e-39
Identities = 100/105 (95%), Gaps = 1/105 (0%)
Strand = Plus / Plus
Query: 4 gggaggttgaacatcctgcatagtgctgccaggaaatccctatttcata-taagaggggg 62
|||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||
Sbjct: 4 gggaggttgaacatcctgcatagtgctgccaggaaacccctatttcgtaataagaggggg 63
Query: 63 ctggctggttgcatatgtaggatgtcccatctcccagcccacttc 107
| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 64 caggctggttgcatatgtaggatgtcccatctccctgcccacttc 108
>RF00723;mir-448;ABRO01488018.1/1178-1067 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 112
Score = 137 bits (69), Expect = 3e-32
Identities = 88/93 (94%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctatttcata-taagagggggc 63
||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||| ||
Sbjct: 5 ggaggttgaacatcctgcatagtgctgccaggaaaaccctattccatactaagagggagc 64
Query: 64 tggctggttgcatatgtaggatgtcccatctcc 96
|||||| ||||||||||||||||||||||||||
Sbjct: 65 tggctgtttgcatatgtaggatgtcccatctcc 97
>RF00723;mir-448;AAKN02039763.1/15790-15679 10141:Cavia porcellus
(domestic guinea pig)
Length = 112
Score = 127 bits (64), Expect = 3e-29
Identities = 95/104 (91%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctatttcata-taagagggggc 63
|||||||||||||||||||| ||||||||| ||||||||| | ||||| ||||||||| |
Sbjct: 5 ggaggttgaacatcctgcatggtgctgccacgaaatccctttgtcatactaagaggggac 64
Query: 64 tggctggttgcatatgtaggatgtcccatctcccagcccacttc 107
|||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 65 tggctggttgcacatgtaggatgtcccatctcctggcccacttc 108
>RF00723;mir-448;AALT01302712.1/526-635 42254:Sorex araneus
(European shrew)
Length = 110
Score = 105 bits (53), Expect = 1e-22
Identities = 96/108 (88%), Gaps = 3/108 (2%)
Strand = Plus / Plus
Query: 4 gggaggttgaacatcctgcatagtgctgccaggaaatccctatttcata-taagaggggg 62
|||||||||||||||||||||||||||||||||||| || || ||| ||| ||||
Sbjct: 4 gggaggttgaacatcctgcatagtgctgccaggaaaatcccgtt--atagtaaaagggca 61
Query: 63 ctggctggttgcatatgtaggatgtcccatctcccagcccacttcgtc 110
||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 62 ctgactggttgcatatgtaggatgtcccatctccctgcccacttcgtc 109
>RF00723;mir-448;ABVD01951229.1/707-778 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 72
Score = 63.9 bits (32), Expect = 4e-10
Identities = 64/72 (88%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 16 atcctgcatagtgctgccaggaaatccctatttcata-taagagggggctggct-ggttg 73
|||||||||| ||||||||||||| ||||||| ||| ||||| |||||||||| |||||
Sbjct: 1 atcctgcataatgctgccaggaaacccctattatatagtaagatggggctggctgggttg 60
Query: 74 catatgtaggat 85
||||| ||||||
Sbjct: 61 catatataggat 72
>RF00723;mir-448;ABRN01082043.1/467-578 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 112
Score = 63.9 bits (32), Expect = 4e-10
Identities = 84/100 (84%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 4 gggaggttgaacatcctgcatagtgctgccaggaaatccctatttcata-taagaggggg 62
|||||| ||||||||||||||||| | |||||||||||||||| ||| ||||||||||
Sbjct: 4 gggaggctgaacatcctgcatagtaatcacaggaaatccctattttatactaagaggggg 63
Query: 63 ctggctggttgcatatgtaggatgtcccatctcccagccc 102
| | |||||| |||||||||||||||||||||||
Sbjct: 64 cggtacccaggcatatttaggatgtcccatctcccagccc 103
