miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00711;mir-449;ABRO01253740.1/3377-3287 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 91
Score = 133 bits (67), Expect = 4e-31
Identities = 85/91 (93%)
Strand = Plus / Plus
Query: 1 ctgtgtgtgatgagctggcagtgtattgttagctggttgaatatgtgaatggcatcggct 60
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1 ctgtgtgtgatgggttggcagtgtattgttagctggttgaatatgtgaatggcatcagct 60
Query: 61 aacatgcaactgctgtcttattgcatataca 91
|||||||| ||||| ||| ||||||||||||
Sbjct: 61 aacatgcacctgctatctcattgcatataca 91
>RF00711;mir-449;AALT01534765.1/2819-2909 42254:Sorex araneus
(European shrew)
Length = 91
Score = 115 bits (58), Expect = 1e-25
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 5 gtgtgatgagctggcagtgtattgttagctggttgaatatgtgaatggcatcggctaaca 64
|||||||||| |||||||||||||||||||||||| |||||||||| ||||| |||||||
Sbjct: 5 gtgtgatgagttggcagtgtattgttagctggttggatatgtgaatagcatcagctaaca 64
Query: 65 tgcaactgctgtcttattgcat 86
|||||||||| ||||||||||
Sbjct: 65 tgcaactgcttgcttattgcat 86
>RF00711;mir-449;AAGW01346249.1/4500-4410 9986:Oryctolagus
cuniculus (rabbit)
Length = 91
Score = 105 bits (53), Expect = 1e-22
Identities = 80/89 (89%)
Strand = Plus / Plus
Query: 3 gtgtgtgatgagctggcagtgtattgttagctggttgaatatgtgaatggcatcggctaa 62
|||||||||||| |||||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 3 gtgtgtgatgaggtggcagtgtattgttagctggttgaatatgtgtgtgatatcagctaa 62
Query: 63 catgcaactgctgtcttattgcatataca 91
||| |||||||| ||||||||||| ||||
Sbjct: 63 catacaactgctatcttattgcatttaca 91
>RF00711;mir-449;AAIY01660884.1/5468-5558 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 91
Score = 87.7 bits (44), Expect = 2e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 6 tgtgatgagctggcagtgtattgttagctggttgaatatgtgaatggcatcggctaacat 65
||||||||| ||||||||||||||||||||||||||||||||| | ||| | |||||| |
Sbjct: 6 tgtgatgagttggcagtgtattgttagctggttgaatatgtgagtagcaccagctaacgt 65
Query: 66 gcaactgctgtcttattgca 85
||| ||||| |||||||||
Sbjct: 66 gcagctgctaacttattgca 85
>RF00711;mir-449;ABRQ01364111.1/2302-2212 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 87.7 bits (44), Expect = 2e-17
Identities = 77/88 (87%)
Strand = Plus / Plus
Query: 1 ctgtgtgtgatgagctggcagtgtattgttagctggttgaatatgtgaatggcatcggct 60
|||||||||||| | ||||||||||||||||||||||||||| || | || |||| |||
Sbjct: 1 ctgtgtgtgatgggttggcagtgtattgttagctggttgaattagtaagtgacatcagct 60
Query: 61 aacatgcaactgctgtcttattgcatat 88
|||||||| ||||| ||||||||||||
Sbjct: 61 aacatgcagctgctaacttattgcatat 88
>RF00711;mir-449;AAKN02031494.1/12810-12899 10141:Cavia porcellus
(domestic guinea pig)
Length = 90
Score = 85.7 bits (43), Expect = 9e-17
Identities = 80/91 (87%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 1 ctgtgtgtgatgagctggcagtgtattgttagctggttgaatatgtgaatggcatcggct 60
|||||||||||| ||||||||||||||||||||||||||||||| | | | | | |||
Sbjct: 1 ctgtgtgtgatgggctggcagtgtattgttagctggttgaatatat-attattagcagct 59
Query: 61 aacatgcaactgctgtcttattgcatataca 91
||||| |||||||| ||||||||||||||||
Sbjct: 60 aacatacaactgctatcttattgcatataca 90
>RF00711;mir-449;CAAA01026551.1/5646-5736 10090:Mus musculus
(house mouse)
Length = 91
Score = 81.8 bits (41), Expect = 1e-15
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 1 ctgtgtgtgatgagctggcagtgtattgttagctggttgaatatgtgaatggcatcggct 60
|||||||||||| ||||||||||||||||||||||||| ||||||| |||| | |||
Sbjct: 1 ctgtgtgtgatggcttggcagtgtattgttagctggttgagtatgtgagcggcaccagct 60
Query: 61 aacatgcaactgctgtcttattgca 85
||||||| |||||| || |||||||
Sbjct: 61 aacatgcgactgctctcctattgca 85
>RF00711;mir-449;ABQO010597990.1/363-452 9315:Macropus eugenii
(tammar wallaby)
Length = 90
Score = 73.8 bits (37), Expect = 3e-13
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 6 tgtgatgagctggcagtgtattgttagctggttgaatatgtgaatggcatcggctaacat 65
||||||| | ||||||||||||||||||||||||||||| |||||| | | |||| ||
Sbjct: 6 tgtgatgggatggcagtgtattgttagctggttgaatatctgaatgt-accagctactat 64
Query: 66 gcaactgctgtcttattgcat 86
|||||||||||| ||||||||
Sbjct: 65 gcaactgctgtcctattgcat 85
>RF00711;mir-449;AAFR03035385.1/18957-18868 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 90
Score = 56.0 bits (28), Expect = 8e-08
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 6 tgtgatgagctggcagtgtattgttagctggttgaatatgtgaa 49
||||||| | ||||||||||||||||||||||||| ||| ||||
Sbjct: 6 tgtgatgggatggcagtgtattgttagctggttgactatctgaa 49
>RF00711;mir-449;AAPN01209390.1/1892-1981 9258:Ornithorhynchus
anatinus (platypus)
Length = 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 16 tggcagtgtattgttagctggttgaatatgtgaatggca 54
||||||||| ||||||||||||||||||| | |||||||
Sbjct: 16 tggcagtgt-ttgttagctggttgaatatttaaatggca 53
