miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00711;mir-449;AACZ02174908.1/1653-1741 9598:Pan troglodytes
(chimpanzee)
Length = 89
Score = 155 bits (78), Expect = 1e-37
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgcttgggtcaagtcagcagcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgcttgggtcaagtcagcagcca 60
Query: 61 caactaccctgccacttg 78
||||||||||||||||||
Sbjct: 61 caactaccctgccacttg 78
>RF00711;mir-449;AAGU02394433.1/7316-7227 9785:Loxodonta africana
(African savanna elephant)
Length = 90
Score = 131 bits (66), Expect = 2e-30
Identities = 85/90 (94%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgc-ttgggtcaagtcagcagcc 59
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgctttgggtcaattcagcagcc 60
Query: 60 acaactaccctgccacttgcttctggataa 89
|| ||||| |||||||||||||| ||||||
Sbjct: 61 acgactacgctgccacttgcttccggataa 90
>RF00711;mir-449;ABRQ01364111.1/2424-2335 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 129 bits (65), Expect = 7e-30
Identities = 81/85 (95%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 6 tgaatcaggtaggcagtgtattgttagctggctgc-ttgggtcaagtcagcagccacaac 64
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 6 tgaatcaggtaggcagtgtattgttagctggctgctttgggtcagttcagcagccacaac 65
Query: 65 taccctgccacttgcttctggataa 89
|| ||||||||||||||||||||||
Sbjct: 66 tatcctgccacttgcttctggataa 90
>RF00711;mir-449;AALT01534765.1/2698-2787 42254:Sorex araneus
(European shrew)
Length = 90
Score = 119 bits (60), Expect = 7e-27
Identities = 79/84 (94%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 4 cctgaatcaggtaggcagtgtattgttagctggctgcttggg-tcaagtcagcagccaca 62
||||| ||||||||||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct: 4 cctgagtcaggtaggcagtgtattgttagctggctgctttggatcagttcagcagccaca 63
Query: 63 actaccctgccacttgcttctgga 86
||||||||||||||||||||||||
Sbjct: 64 actaccctgccacttgcttctgga 87
>RF00711;mir-449;AAQR01454395.1/190-101 30611:Otolemur garnettii
(small-eared galago)
Length = 90
Score = 111 bits (56), Expect = 2e-24
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 7 gaatcaggtaggcagtgtattgttagctggctgc-ttgggtcaagtcagcagccacaact 65
|||||||||||||||||||||||||||||||||| ||| || |||| ||||||| ||||
Sbjct: 7 gaatcaggtaggcagtgtattgttagctggctgctttgcatcgagtccgcagccataact 66
Query: 66 accctgccacttgcttctggataa 89
||||||||||||||||||||||||
Sbjct: 67 accctgccacttgcttctggataa 90
>RF00711;mir-449;AABR04048554.1/12526-12437 10116:Rattus
norvegicus (Norway rat)
Length = 90
Score = 107 bits (54), Expect = 3e-23
Identities = 73/78 (93%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 10 tcaggtaggcagtgtattgttagctggctgc-ttgggtcaagtcagcagccacaactacc 68
||||||||||||||| ||||||||||||||| |||||| |||| |||||||||| |||||
Sbjct: 10 tcaggtaggcagtgtgttgttagctggctgcgttgggttaagtaagcagccacagctacc 69
Query: 69 ctgccacttgcttctgga 86
||||||||||||||||||
Sbjct: 70 ctgccacttgcttctgga 87
>RF00711;mir-449;ABRO01253740.1/3498-3409 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 90
Score = 107 bits (54), Expect = 3e-23
Identities = 79/86 (91%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgcttgggtc-aagtcagcagcc 59
||||| || ||||||||||||||| ||||||||||||||||| || | ||||||||||||
Sbjct: 1 tgacccgagtcaggtaggcagtgtgttgttagctggctgctttggaccaagtcagcagcc 60
Query: 60 acaactaccctgccacttgcttctgg 85
||||| ||||||||||||||||||||
Sbjct: 61 acaacgaccctgccacttgcttctgg 86
>RF00711;mir-449;AAGW01346249.1/4621-4532 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 99.6 bits (50), Expect = 6e-21
Identities = 78/86 (90%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgc-ttgggtcaagtcagcagcc 59
||||||||| ||||||||||||||| |||||| ||||||| |||||||||||||||||||
Sbjct: 1 tgacctgaagcaggtaggcagtgtaatgttagttggctgctttgggtcaagtcagcagcc 60
Query: 60 acaactaccctgccacttgcttctgg 85
||| ||| ||||||||||| |||||
Sbjct: 61 acaggtacgctgccacttgcctctgg 86
>RF00711;mir-449;CAAA01026551.1/5526-5613 10090:Mus musculus
(house mouse)
Length = 88
Score = 77.8 bits (39), Expect = 2e-14
Identities = 67/74 (90%), Gaps = 3/74 (4%)
Strand = Plus / Plus
Query: 13 ggtaggcagtgtattgttagctggctgc-ttgggtcaagtcagcagccacaactaccctg 71
|||||||||||| |||||||||||||| |||||||| | ||||||||||| ||||||||
Sbjct: 13 ggtaggcagtgt--tgttagctggctgcgttgggtcaggccagcagccacagctaccctg 70
Query: 72 ccacttgcttctgg 85
|||||| |||||||
Sbjct: 71 ccacttccttctgg 84
>RF00711;mir-449;ABQO010597990.1/221-310 9315:Macropus eugenii
(tammar wallaby)
Length = 90
Score = 75.8 bits (38), Expect = 9e-14
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 10 tcaggtaggcagtgtattgttagctggctgcttggg-tcaagtcagcagccacaactacc 68
||||||||||||||| ||| ||||||||||||||| ||| ||||||| |||||| |||
Sbjct: 10 tcaggtaggcagtgtgctgtaagctggctgcttgggttcagttcagcagtcacaaccacc 69
Query: 69 ctgccacttgcttctgga 86
|||||||||||| |||||
Sbjct: 70 ctgccacttgctcctgga 87
>RF00711;mir-449;AAFR03035385.1/19098-19010 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 89
Score = 58.0 bits (29), Expect = 2e-08
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 10 tcaggtaggcagtgtattgttagctggctgcttgggtcaagtcagcagccacaactaccc 69
|||||||||||||| ||| |||||||||||||| |||| | ||||| || ||| |||
Sbjct: 10 tcaggtaggcagtgcgctgtaagctggctgcttggctcaatttagcagtcaggactgccc 69
Query: 70 tgccacttgcttctgga 86
||||||||||| |||||
Sbjct: 70 tgccacttgctcctgga 86
>RF00711;mir-449;ABRR01198614.1/1669-1591 30538:Lama pacos
(alpaca)
Length = 79
Score = 50.1 bits (25), Expect = 5e-06
Identities = 45/49 (91%), Gaps = 2/49 (4%)
Strand = Plus / Plus
Query: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgcttgggtcaa 49
||||||||||||| ||| ||||||||||||||||| |||||||| ||||
Sbjct: 2 tgacctgaatcag-tag-cagtgtattgttagctgactgcttggatcaa 48
>RF00711;mir-449;AAQQ01588713.1/2879-2788 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 10 tcaggtaggcagtgtattgttagctggctg 39
|||||||||||||| |||| ||||||||||
Sbjct: 10 tcaggtaggcagtgcattgctagctggctg 39
>RF00711;mir-449;AAVX01082942.1/500-413 7868:Callorhinchus milii
(ghost shark)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 taggcagtgtattgttagctggctgc 40
||||||||||| ||||||||||||||
Sbjct: 15 taggcagtgtaatgttagctggctgc 40
