miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00708;mir-450;AANU01115741.1/25269-25359 9544:Macaca mulatta
(rhesus monkey)
Length = 91
Score = 157 bits (79), Expect = 3e-38
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 5 gatactaaactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacatt 64
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5 gatactaaactgtttttgcgatgtgttcctaatatgtactataaatatattgggaacatt 64
Query: 65 ttgcatgtatagttttgtatcaatata 91
|||||||| ||||||||||||||||||
Sbjct: 65 ttgcatgtgtagttttgtatcaatata 91
>RF00708;mir-450;AAYZ01306302.1/1275-1185 9978:Ochotona princeps
(American pika)
Length = 91
Score = 123 bits (62), Expect = 4e-28
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 9 ctaaactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacattttgc 68
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 9 ctaaactgtttttgcgatatgttcctaatatgcactataactatattgggaacattttgc 68
Query: 69 atgtatagttttgt 82
||| ||||||||||
Sbjct: 69 atgcatagttttgt 82
>RF00708;mir-450;AACN010723377.1/501-591 9615:Canis lupus
familiaris (dog)
Length = 91
Score = 111 bits (56), Expect = 2e-24
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 12 aactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacattttgcatg 71
||||||||||||||||||||||||||||||| ||| || ||||||||| |||||||||||
Sbjct: 12 aactgtttttgcgatgtgttcctaatatgcagtatgaacatattgggagcattttgcatg 71
Query: 72 tatagttttgtatcaatata 91
|| ||||||||||||||||
Sbjct: 72 catggttttgtatcaatata 91
>RF00708;mir-450;ABRQ01123746.1/594-504 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 105 bits (53), Expect = 1e-22
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 9 ctaaactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacattttgc 68
||||||| |||||||||| ||||||||||||| ||||| |||||||||||||||||||
Sbjct: 9 ctaaactatttttgcgatatgttcctaatatgttatataagtatattgggaacattttgc 68
Query: 69 atgtatagttttgtatcaata 89
|| ||||||||||||||||||
Sbjct: 69 atctatagttttgtatcaata 89
>RF00708;mir-450;AACN010723377.1/367-457 9615:Canis lupus
familiaris (dog)
Length = 91
Score = 97.6 bits (49), Expect = 2e-20
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 12 aactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacattttgcatg 71
|||| |||||||||||||||||||||||| ||||||| | |||||||||||||||||||
Sbjct: 12 aactatttttgcgatgtgttcctaatatgtactataagtgtattgggaacattttgcatt 71
Query: 72 tatagttttgtatcaat 88
|||||||||| |||||
Sbjct: 72 catagttttgtgtcaat 88
>RF00708;mir-450;CAAA01222947.1/3684-3594 10090:Mus musculus
(house mouse)
Length = 91
Score = 97.6 bits (49), Expect = 2e-20
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 5 gatactaaactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacatt 64
|||||| | ||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 5 gatactgagctgtttttgcgatgtgttcctaatatgtgctataattatattgggaacatt 64
Query: 65 ttgcatgtatagttttgtatcaata 89
|||||| |||| ||||| ||||||
Sbjct: 65 ttgcataaatagctttgtgtcaata 89
>RF00708;mir-450;AAQQ01708411.1/190-100 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 91
Score = 91.7 bits (46), Expect = 1e-18
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 12 aactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacattttgcatg 71
|||| |||||||||||||||||||||||| | || ||| |||||||||||||||||||
Sbjct: 12 aactatttttgcgatgtgttcctaatatgtaataagaatgtattgggaacattttgcatt 71
Query: 72 tatagttttgtatcaata 89
| ||||||||||||||||
Sbjct: 72 tgtagttttgtatcaata 89
>RF00708;mir-450;ABRQ01123746.1/420-330 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 87.7 bits (44), Expect = 2e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 12 aactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacattttgcatg 71
|||| |||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 12 aactatttttgtgatgtgttcctaatattgtgtataaatatattgggaacattttgcatt 71
Query: 72 tatagttttgtatcaatata 91
| | ||||||||||||||||
Sbjct: 72 tgtggttttgtatcaatata 91
>RF00708;mir-450;AAGV020284255.1/3919-3829 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 91
Score = 77.8 bits (39), Expect = 2e-14
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 11 aaactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacattttgcat 70
||||| |||||| ||||||||||||||||| | ||||| | ||||||||| |||||||||
Sbjct: 11 aaactatttttgtgatgtgttcctaatatgaaatataagtgtattgggaatattttgcat 70
Query: 71 gtatagttttgtatcaata 89
|| ||||||||||||||
Sbjct: 71 ccatggttttgtatcaata 89
>RF00708;mir-450;AABR04140564.1/3502-3412 10116:Rattus norvegicus
(Norway rat)
Length = 91
Score = 77.8 bits (39), Expect = 2e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 14 ctgtttttgcgatgtgttcctaatatgcactataaatatattgggaacattttgcatgta 73
|||||||||||||||||||||||| || ||| || ||||||||||||||||||||| |
Sbjct: 14 ctgtttttgcgatgtgttcctaatgtgtgctacaattatattgggaacattttgcataaa 73
Query: 74 tagtttt 80
|||||||
Sbjct: 74 tagtttt 80
>RF00708;mir-450;ABRO01450845.1/1386-1298 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 89
Score = 77.8 bits (39), Expect = 2e-14
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcctaatatgcactataaatatattgggaacattttgcatgtatag 76
||||||||||||||| |||||||||||| | |||||| ||||||||||| ||||| | |
Sbjct: 16 tttttgcgatgtgttactaatatgcactttgaatatactgggaacatttcgcatg-cttg 74
Query: 77 ttttgtatcaatata 91
|||||||||||||||
Sbjct: 75 ttttgtatcaatata 89
>RF00708;mir-450;AAYZ01306302.1/1453-1363 9978:Ochotona princeps
(American pika)
Length = 91
Score = 73.8 bits (37), Expect = 3e-13
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 9 ctaaactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacattttgc 68
||||||| |||||||||||||||||||||||| | | ||| | ||||||| ||| || ||
Sbjct: 9 ctaaactatttttgcgatgtgttcctaatatgtaatgtaactgtattggggacacttggc 68
Query: 69 atgtatagttttgtatcaata 89
|| |||||||||||||||||
Sbjct: 69 attcatagttttgtatcaata 89
>RF00708;mir-450;AAKN02053360.1/153106-153014 10141:Cavia
porcellus (domestic guinea pig)
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 44 tataaatatattgggaacattttgcatgtatagttttgtatcaatata 91
||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 46 tataagtatattgggaacattttgcatccatagttttgtatcaatata 93
>RF00708;mir-450;CAAA01222947.1/3522-3431 10090:Mus musculus
(house mouse)
Length = 92
Score = 63.9 bits (32), Expect = 3e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 52 tattgggaacattttgcatgtatagttttgtatcaatata 91
|||||||||||||||||||| ||| |||||||||||||||
Sbjct: 53 tattgggaacattttgcatgcataattttgtatcaatata 92
>RF00708;mir-450;BX649621.5/156260-156170 10090:Mus musculus
(house mouse)
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 12 aactgtttttgcgatgtgttcctaatatgcactataaatatattggg 58
|||| |||||||||||||||||||||||| ||||| | |||||||||
Sbjct: 12 aactatttttgcgatgtgttcctaatatgtactatgagtatattggg 58
>RF00708;mir-450;ABRO01450845.1/1546-1456 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcctaatatgcactataaatatattgggaacattttgcatgtatag 76
|||||||||||||||| ||||||| ||| ||| ||||||| |||| |||||| ||||
Sbjct: 17 tttttgcgatgtgttcataatatgttatatgaatgtattggggacatcttgcattcatag 76
Query: 77 ttttgtatcaata 89
||| |||||||||
Sbjct: 77 tttcgtatcaata 89
>RF00708;mir-450;AAGU02249219.1/617-526 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 52 tattgggaacattttgcatgtatagttttgtatcaatata 91
|||||||| |||||||||| ||||||||||||| |||||
Sbjct: 53 tattgggagcattttgcatccatagttttgtatcgatata 92
>RF00708;mir-450;AANN01800872.1/333-426 9365:Erinaceus europaeus
(western European hedgehog)
Length = 94
Score = 46.1 bits (23), Expect = 8e-05
Identities = 45/52 (86%), Gaps = 4/52 (7%)
Strand = Plus / Plus
Query: 24 gatgtgttcctaatatgcact----ataaatatattgggaacattttgcatg 71
||||||||||||||||||| | ||||||||||||||| || ||||||||
Sbjct: 23 gatgtgttcctaatatgcagtttagataaatatattgggagcactttgcatg 74
