miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00708;mir-450;AAYZ01306302.1/1453-1363 9978:Ochotona princeps
(American pika)
Length = 91
Score = 149 bits (75), Expect = 8e-36
Identities = 87/91 (95%)
Strand = Plus / Plus
Query: 6 gaaagatgctaaactatttttgcgatgtgttcctaatatgtaatataaatgtattgggga 65
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 1 gaaagatgctaaactatttttgcgatgtgttcctaatatgtaatgtaactgtattgggga 60
Query: 66 cattttgcattcatagttttgtatcaataat 96
|| || |||||||||||||||||||||||||
Sbjct: 61 cacttggcattcatagttttgtatcaataat 91
>RF00708;mir-450;AAQQ01708411.1/190-100 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 91
Score = 131 bits (66), Expect = 2e-30
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 7 aaagatgctaaactatttttgcgatgtgttcctaatatgtaatataaatgtattggggac 66
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 2 aaagatgctgaactatttttgcgatgtgttcctaatatgtaataagaatgtattgggaac 61
Query: 67 attttgcattcatagttttgtatcaataat 96
|||||||||| ||||||||||||||||||
Sbjct: 62 attttgcatttgtagttttgtatcaataat 91
>RF00708;mir-450;ABRO01450845.1/1546-1456 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 91
Score = 131 bits (66), Expect = 2e-30
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 7 aaagatgctaaactatttttgcgatgtgttcctaatatgtaatataaatgtattggggac 66
|||||||||| |||||||||||||||||||| |||||||| |||| ||||||||||||||
Sbjct: 2 aaagatgctagactatttttgcgatgtgttcataatatgttatatgaatgtattggggac 61
Query: 67 attttgcattcatagttttgtatcaataat 96
|| ||||||||||||||| |||||||||||
Sbjct: 62 atcttgcattcatagtttcgtatcaataat 91
>RF00708;mir-450;AACN010723377.1/367-457 9615:Canis lupus
familiaris (dog)
Length = 91
Score = 127 bits (64), Expect = 3e-29
Identities = 82/88 (93%)
Strand = Plus / Plus
Query: 6 gaaagatgctaaactatttttgcgatgtgttcctaatatgtaatataaatgtattgggga 65
||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| |
Sbjct: 1 gaaagatgcctaactatttttgcgatgtgttcctaatatgtactataagtgtattgggaa 60
Query: 66 cattttgcattcatagttttgtatcaat 93
|||||||||||||||||||||| |||||
Sbjct: 61 cattttgcattcatagttttgtgtcaat 88
>RF00708;mir-450;ABRQ01123746.1/594-504 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 121 bits (61), Expect = 2e-27
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 6 gaaagatgctaaactatttttgcgatgtgttcctaatatgtaatataaatgtattgggga 65
|||||||||||||||||||||||||| |||||||||||||| |||||| | ||||||| |
Sbjct: 1 gaaagatgctaaactatttttgcgatatgttcctaatatgttatataagtatattgggaa 60
Query: 66 cattttgcattcatagttttgtatcaata 94
|||||||||| |||||||||||||||||
Sbjct: 61 cattttgcatctatagttttgtatcaata 89
>RF00708;mir-450;AAGV020284255.1/3919-3829 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 91
Score = 107 bits (54), Expect = 3e-23
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 10 gatgctaaactatttttgcgatgtgttcctaatatgtaatataaatgtattggggacatt 69
||||| |||||||||||| ||||||||||||||||| ||||||| ||||||||| | |||
Sbjct: 5 gatgcaaaactatttttgtgatgtgttcctaatatgaaatataagtgtattgggaatatt 64
Query: 70 ttgcattcatagttttgtatcaataa 95
|||||| ||| |||||||||||||||
Sbjct: 65 ttgcatccatggttttgtatcaataa 90
>RF00708;mir-450;AANU01115741.1/25269-25359 9544:Macaca mulatta
(rhesus monkey)
Length = 91
Score = 105 bits (53), Expect = 1e-22
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 14 ctaaactatttttgcgatgtgttcctaatatgtaatataaatgtattggggacattttgc 73
||||||| |||||||||||||||||||||||||| ||||||| ||||||| |||||||||
Sbjct: 9 ctaaactgtttttgcgatgtgttcctaatatgtactataaatatattgggaacattttgc 68
Query: 74 attcatagttttgtatcaata 94
|| ||||||||||||||||
Sbjct: 69 atgtgtagttttgtatcaata 89
>RF00708;mir-450;AAYZ01306302.1/1275-1185 9978:Ochotona princeps
(American pika)
Length = 91
Score = 99.6 bits (50), Expect = 7e-21
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 6 gaaagatgctaaactatttttgcgatgtgttcctaatatgtaatataaatgtattgggga 65
||||||||||||||| |||||||||| ||||||||||||| | ||||| | ||||||| |
Sbjct: 1 gaaagatgctaaactgtttttgcgatatgttcctaatatgcactataactatattgggaa 60
Query: 66 cattttgcattcatagttttgt 87
|||||||||| |||||||||||
Sbjct: 61 cattttgcatgcatagttttgt 82
>RF00708;mir-450;AACN010723377.1/501-591 9615:Canis lupus
familiaris (dog)
Length = 91
Score = 89.7 bits (45), Expect = 6e-18
Identities = 78/89 (87%)
Strand = Plus / Plus
Query: 6 gaaagatgctaaactatttttgcgatgtgttcctaatatgtaatataaatgtattgggga 65
|||||||||| |||| |||||||||||||||||||||||| | ||| || |||||||
Sbjct: 1 gaaagatgctgaactgtttttgcgatgtgttcctaatatgcagtatgaacatattgggag 60
Query: 66 cattttgcattcatagttttgtatcaata 94
|||||||||| ||| ||||||||||||||
Sbjct: 61 cattttgcatgcatggttttgtatcaata 89
>RF00708;mir-450;BX649621.5/156260-156170 10090:Mus musculus
(house mouse)
Length = 91
Score = 79.8 bits (40), Expect = 6e-15
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 8 aagatgctaaactatttttgcgatgtgttcctaatatgtaatataaatgtattggggaca 67
|||||||| ||||||||||||||||||||||||||||||| ||| | | |||||||||
Sbjct: 3 aagatgctgaactatttttgcgatgtgttcctaatatgtactatgagtatattggggatg 62
Query: 68 ttttgcattcat 79
|||||||||||
Sbjct: 63 ctttgcattcat 74
>RF00708;mir-450;AAKN02053360.1/153106-153014 10141:Cavia
porcellus (domestic guinea pig)
Length = 93
Score = 75.8 bits (38), Expect = 9e-14
Identities = 68/77 (88%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 20 tatttttgcgatgtgttcctaatatgtaatataaatgtat--tggggacattttgcattc 77
||||||||| || ||||||| |||||||||||| | |||| |||| ||||||||||| |
Sbjct: 15 tatttttgcaatatgttcctgatatgtaatatataagtatattgggaacattttgcatcc 74
Query: 78 atagttttgtatcaata 94
|||||||||||||||||
Sbjct: 75 atagttttgtatcaata 91
>RF00708;mir-450;ABRQ01123746.1/420-330 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 75.8 bits (38), Expect = 9e-14
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 17 aactatttttgcgatgtgttcctaatatgtaatataaatgtattggggacattttgcatt 76
||||||||||| |||||||||||||||| ||||||| ||||||| ||||||||||||
Sbjct: 12 aactatttttgtgatgtgttcctaatattgtgtataaatatattgggaacattttgcatt 71
Query: 77 catagttttgtatcaata 94
| ||||||||||||||
Sbjct: 72 tgtggttttgtatcaata 89
>RF00708;mir-450;CAAA01222947.1/3684-3594 10090:Mus musculus
(house mouse)
Length = 91
Score = 73.8 bits (37), Expect = 4e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 22 tttttgcgatgtgttcctaatatgtaatataaatgtattggggacattttgcattcatag 81
||||||||||||||||||||||||| ||||| | ||||||| ||||||||||| ||||
Sbjct: 17 tttttgcgatgtgttcctaatatgtgctataattatattgggaacattttgcataaatag 76
Query: 82 ttttgtatcaata 94
||||| ||||||
Sbjct: 77 ctttgtgtcaata 89
>RF00708;mir-450;ABRO01450845.1/1386-1298 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 89
Score = 58.0 bits (29), Expect = 2e-08
Identities = 76/89 (85%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 6 gaaagatgctaaactatttttgcgatgtgttcctaatatgtaatataaatgtattgggga 65
||||||||||||| ||||||||||||||||| |||||||| | | | ||| || |||| |
Sbjct: 1 gaaagatgctaaa-tatttttgcgatgtgttactaatatgcactttgaatatactgggaa 59
Query: 66 cattttgcattcatagttttgtatcaata 94
||||| |||| | | ||||||||||||||
Sbjct: 60 catttcgcatgc-ttgttttgtatcaata 87
>RF00708;mir-450;AABR04140564.1/3502-3412 10116:Rattus norvegicus
(Norway rat)
Length = 91
Score = 56.0 bits (28), Expect = 9e-08
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 22 tttttgcgatgtgttcctaatatgtaatataaatgtattggggacattttgcattcatag 81
||||||||||||||||||||| ||| || || | ||||||| ||||||||||| ||||
Sbjct: 17 tttttgcgatgtgttcctaatgtgtgctacaattatattgggaacattttgcataaatag 76
Query: 82 tttt 85
||||
Sbjct: 77 tttt 80
>RF00708;mir-450;AAGU02249219.1/617-526 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 56.0 bits (28), Expect = 9e-08
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 20 tatttttgcgatgtgttcct-aatatgtaatataaatgtattggggacattttgcattca 78
||||||||| || ||||||| ||||||||| || ||||||||| |||||||||| ||
Sbjct: 15 tatttttgcaatatgttcctgaatatgtaagccaagtgtattgggagcattttgcatcca 74
Query: 79 tagttttgtatc 90
||||||||||||
Sbjct: 75 tagttttgtatc 86
>RF00708;mir-450;CAAA01222947.1/3522-3431 10090:Mus musculus
(house mouse)
Length = 92
Score = 54.0 bits (27), Expect = 3e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 56 gtattggggacattttgcattcatagttttgtatcaata 94
|||||||| ||||||||||| |||| |||||||||||||
Sbjct: 52 gtattgggaacattttgcatgcataattttgtatcaata 90
