miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00708;mir-450;AAGU02249219.1/617-526 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 115 bits (58), Expect = 8e-26
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 5 aattatttttgcaatatgttcctgaatatgtaatataagtgtattgggatcattttgcat 64
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 12 aattatttttgcaatatgttcctgaatatgtaagccaagtgtattgggagcattttgcat 71
Query: 65 ccatagttttgtat 78
||||||||||||||
Sbjct: 72 ccatagttttgtat 85
>RF00708;mir-450;AAKN02053360.1/153106-153014 10141:Cavia
porcellus (domestic guinea pig)
Length = 93
Score = 105 bits (53), Expect = 8e-23
Identities = 75/80 (93%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 1 gcagaattatttttgcaatatgttcctgaatatgtaatata--agtgtattgggatcatt 58
||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| ||||
Sbjct: 8 gcagaattatttttgcaatatgttcctga-tatgtaatatataagtatattgggaacatt 66
Query: 59 ttgcatccatagttttgtat 78
||||||||||||||||||||
Sbjct: 67 ttgcatccatagttttgtat 86
>RF00708;mir-450;CAAA01222947.1/3522-3431 10090:Mus musculus
(house mouse)
Length = 92
Score = 89.7 bits (45), Expect = 5e-18
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 2 cagaattatttttgcaatatgttcctgaatatgtaatataagtgtattgggatcattttg 61
|||||||||||||||| |||||||||||||| ||| ||||| ||||||||| |||||||
Sbjct: 9 cagaattatttttgcagtatgttcctgaatacataacataagcgtattgggaacattttg 68
Query: 62 catccatagttttgtat 78
||| |||| ||||||||
Sbjct: 69 catgcataattttgtat 85
>RF00708;mir-450;ABRQ01123746.1/594-504 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 85.7 bits (43), Expect = 7e-17
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 8 tatttttgcaatatgttcctgaatatgtaatataagtgtattgggatcattttgcatcca 67
||||||||| |||||||||| ||||||| |||||||| |||||||| ||||||||||| |
Sbjct: 15 tatttttgcgatatgttcct-aatatgttatataagtatattgggaacattttgcatcta 73
Query: 68 tagttttgtat 78
|||||||||||
Sbjct: 74 tagttttgtat 84
>RF00708;mir-450;AACN010723377.1/367-457 9615:Canis lupus
familiaris (dog)
Length = 91
Score = 81.8 bits (41), Expect = 1e-15
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 8 tatttttgcaatatgttcctgaatatgtaatataagtgtattgggatcattttgcatcca 67
||||||||| || ||||||| |||||||| |||||||||||||||| |||||||||| ||
Sbjct: 15 tatttttgcgatgtgttcct-aatatgtactataagtgtattgggaacattttgcattca 73
Query: 68 tagttttgt 76
|||||||||
Sbjct: 74 tagttttgt 82
>RF00708;mir-450;AAGV020284255.1/3919-3829 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 91
Score = 69.9 bits (35), Expect = 4e-12
Identities = 63/71 (88%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 8 tatttttgcaatatgttcctgaatatgtaatataagtgtattgggatcattttgcatcca 67
|||||||| || ||||||| |||||| |||||||||||||||||| ||||||||||||
Sbjct: 15 tatttttgtgatgtgttcct-aatatgaaatataagtgtattgggaatattttgcatcca 73
Query: 68 tagttttgtat 78
| |||||||||
Sbjct: 74 tggttttgtat 84
>RF00708;mir-450;AAYZ01306302.1/1275-1185 9978:Ochotona princeps
(American pika)
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 10 tttttgcaatatgttcctgaatatgtaatataagtgtattgggatcattttgcatccata 69
||||||| |||||||||| |||||| | ||||| | |||||||| |||||||||| ||||
Sbjct: 17 tttttgcgatatgttcct-aatatgcactataactatattgggaacattttgcatgcata 75
Query: 70 gttttgt 76
|||||||
Sbjct: 76 gttttgt 82
>RF00708;mir-450;ABRQ01123746.1/258-164 9813:Procavia capensis
(cape rock hyrax)
Length = 95
Score = 61.9 bits (31), Expect = 1e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 5 aattatttttgcaatatgttcctgaatatgtaatataagtgtattgggatcattttgcat 64
|||||||| ||||| |||||||||| || ||| |||||||||||||| ||| ||||||
Sbjct: 12 aattatttatgcaagatgttcctgactacataaggtaagtgtattgggagcatattgcat 71
Query: 65 ccatagt 71
|||||||
Sbjct: 72 ccatagt 78
>RF00708;mir-450;AAQQ01708411.1/190-100 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 8 tatttttgcaatatgttcctgaatatgtaatataagtgtattgggatcattttgcatcca 67
||||||||| || ||||||| ||||||||||| | |||||||||| ||||||||||
Sbjct: 15 tatttttgcgatgtgttcct-aatatgtaataagaatgtattgggaacattttgcatttg 73
Query: 68 tagttttgtat 78
|||||||||||
Sbjct: 74 tagttttgtat 84
>RF00708;mir-450;AAYZ01306302.1/1453-1363 9978:Ochotona princeps
(American pika)
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 8 tatttttgcaatatgttcctgaatatgtaatataagtgtattgggatcattttgcatcca 67
||||||||| || ||||||| |||||||||| ||| ||||||||| || || |||| ||
Sbjct: 15 tatttttgcgatgtgttcct-aatatgtaatgtaactgtattggggacacttggcattca 73
Query: 68 tagttttgtat 78
|||||||||||
Sbjct: 74 tagttttgtat 84
>RF00708;mir-450;AANU01115741.1/25269-25359 9544:Macaca mulatta
(rhesus monkey)
Length = 91
Score = 50.1 bits (25), Expect = 4e-06
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 10 tttttgcaatatgttcctgaatatgtaatataagtgtattgggatcattttgcatccata 69
||||||| || ||||||| |||||||| ||||| | |||||||| |||||||||| ||
Sbjct: 17 tttttgcgatgtgttcct-aatatgtactataaatatattgggaacattttgcatgtgta 75
Query: 70 gttttgtat 78
|||||||||
Sbjct: 76 gttttgtat 84
