miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00783;mir-484;AAQR01301275.1/437-371 30611:Otolemur garnettii
(small-eared galago)
Length = 67
Score = 109 bits (55), Expect = 5e-24
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 4 ctcgtcaggctcagtcccctcccgataaacccctaaatagggactttcccggggggtga 62
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 ctcgtcaggctcagtcccctcccgataaacccttaaatagggactttcccggggggtga 59
>RF00783;mir-484;ABRN01303405.1/2650-2584 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 67
Score = 99.6 bits (50), Expect = 5e-21
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 4 ctcgtcaggctcagtcccctcccgataaacccctaaatagggactttcccgggg 57
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 ctcgtcaggctcagtcccctcccgataaacccctaaatagggaccttcccgggg 54
>RF00783;mir-484;AAGU02344821.1/171-237 9785:Loxodonta africana
(African savanna elephant)
Length = 67
Score = 93.7 bits (47), Expect = 3e-19
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 4 ctcgtcaggctcagtcccctcccgataaacccctaaatagggactttcccggggggtgac 63
||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||
Sbjct: 1 ctcgtcaggctcagtcccctcccgataaaaccctaaatagggaccttccatgggggtgac 60
Query: 64 cctggct 70
| |||||
Sbjct: 61 cgtggct 67
>RF00783;mir-484;AALT01092469.1/602-536 42254:Sorex araneus
(European shrew)
Length = 67
Score = 91.7 bits (46), Expect = 1e-18
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 4 ctcgtcaggctcagtcccctcccgataaacccctaaatagggactttccc 53
|||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 ctcgtcaggctcagtcccctcccgataaacccctaaatagggaccttccc 50
>RF00783;mir-484;ABRO01185485.1/4022-3956 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 67
Score = 89.7 bits (45), Expect = 5e-18
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 4 ctcgtcaggctcagtcccctcccgataaacccctaaatagggactttcccggggggt 60
|||||||||||||||||||||||||||||||||||||||| | |||||| |||||||
Sbjct: 1 ctcgtcaggctcagtcccctcccgataaacccctaaatagcggctttcctggggggt 57
>RF00783;mir-484;ABRQ01092945.1/1854-1788 9813:Procavia capensis
(cape rock hyrax)
Length = 67
Score = 89.7 bits (45), Expect = 5e-18
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 4 ctcgtcaggctcagtcccctcccgataaacccctaaatagggactttcccggggggtgac 63
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||
Sbjct: 1 ctcgtcaggctcagtcccctcccgataaaaccctaaatagggaacttcccggggggcgat 60
Query: 64 cctgg 68
|||||
Sbjct: 61 cctgg 65
>RF00783;mir-484;AAPY01325197.1/1143-1078 37347:Tupaia belangeri
(northern tree shrew)
Length = 66
Score = 73.8 bits (37), Expect = 3e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 4 ctcgtcaggctcagtcccctcccgataaacccctaaatagg 44
||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 ctcgtcaggctcagtcccctcccgataaagccctaaatagg 41
>RF00783;mir-484;AAHX01062820.1/36411-36347 10116:Rattus
norvegicus (Norway rat)
Length = 65
Score = 67.9 bits (34), Expect = 2e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 4 ctcgtcaggctcagtcccctcccgataaacccctaaataggg 45
||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 1 ctcgtcaggctcagtcccctcccgataaacctcaaaataggg 42
>RF00783;mir-484;AC164291.2/38618-38684 10090:Mus musculus (house
mouse)
Length = 67
Score = 67.9 bits (34), Expect = 2e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 4 ctcgtcaggctcagtcccctcccgataaacccctaaataggg 45
||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 1 ctcgtcaggctcagtcccctcccgataaacctcaaaataggg 42
>RF00783;mir-484;AAYZ01087935.1/68-134 9978:Ochotona princeps
(American pika)
Length = 67
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 4 ctcgtcaggctcagtcccctcccgataaacc 34
|||||||||||||||||||||||||||||||
Sbjct: 1 ctcgtcaggctcagtcccctcccgataaacc 31
>RF00783;mir-484;AAGW01219908.1/7953-7887 9986:Oryctolagus
cuniculus (rabbit)
Length = 67
Score = 60.0 bits (30), Expect = 4e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 14 tcagtcccctcccgataaacccctaaatagggactttcccgggggg 59
|||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct: 11 tcagtcgcctcccgataaacctctaaatagggaacttcccgggggg 56
>RF00783;mir-484;AANN01741400.1/199-264 9365:Erinaceus europaeus
(western European hedgehog)
Length = 66
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 4 ctcgtcaggctcagtcccctcccgataaa 32
|||||||||||||||||||||||||||||
Sbjct: 1 ctcgtcaggctcagtcccctcccgataaa 29
>RF00783;mir-484;AAKN02007627.1/182653-182587 10141:Cavia
porcellus (domestic guinea pig)
Length = 67
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 4 ctcgtcaggctcagtcccctcccgataaacccctaaatagg 44
|||||||||||||||||||||| |||||| ||||||||||
Sbjct: 1 ctcgtcaggctcagtcccctcctgataaattcctaaatagg 41
>RF00783;mir-484;ABRT010169455.1/62-1 9478:Tarsius syrichta
(Philippine tarsier)
Length = 62
Score = 48.1 bits (24), Expect = 2e-05
Identities = 50/56 (89%), Gaps = 2/56 (3%)
Strand = Plus / Plus
Query: 4 ctcgtcaggctcagtcccctccc-gataaacccctaaatagggactttcccggggg 58
||||||||| ||| ||||||||| |||||||||||| ||||| ||||||||||||
Sbjct: 1 ctcgtcaggttcactcccctccccgataaacccctatttaggg-ctttcccggggg 55
