miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054375.1/598-677 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 151 bits (76), Expect = 2e-36
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgctttatttatgacgaatcatacaggg 60
Query: 61 acatccagtttttcagtatc 80
||||||||||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>RF00641;mir-154;ABRQ01054373.1/1995-2074 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 71.9 bits (36), Expect = 1e-12
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
||||||||||||||||||||||||| |||||| || | | ||| |||||| |||||||
Sbjct: 1 ggtacttgaagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacaggg 60
Query: 61 acatccagtttttcagtatc 80
|||||| ||||||||||||
Sbjct: 61 tcatccactttttcagtatc 80
>RF00641;mir-154;AAYZ01254085.1/3260-3339 9978:Ochotona princeps
(American pika)
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 50 atcatacagggacatccagtttttcag 76
|||||||||||||||||||||||||||
Sbjct: 50 atcatacagggacatccagtttttcag 76
>RF00641;mir-154;ABRQ01054377.1/1437-1516 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 50.1 bits (25), Expect = 4e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcataca 57
|||||||||||| |||||||| || || ||||||| |||| ||||||||||||||
Sbjct: 1 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcataca 57
