miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00861;mir-488;ABRQ01338342.1/1706-1788 9813:Procavia capensis
          (cape rock hyrax)
          Length = 83

 Score =  149 bits (75), Expect = 6e-36
 Identities = 81/83 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  gagaatcatctctcccagataatggcactctcaaacaagtttccaaattgtttgaaaggc 60
          |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1  gagaatcatctctcccagataatggcactctcaaacaagtttccaagttgtttgaaaggc 60

                                 
Query: 61 tatttcttggtcagatgactctc 83
          ||||||||||||||| |||||||
Sbjct: 61 tatttcttggtcagaagactctc 83




>RF00861;mir-488;AAKN02017728.1/41994-42076 10141:Cavia porcellus
          (domestic guinea pig)
          Length = 83

 Score = 85.7 bits (43), Expect = 8e-17
 Identities = 67/75 (89%)
 Strand = Plus / Plus

                                                                      
Query: 1  gagaatcatctctcccagataatggcactctcaaacaagtttccaaattgtttgaaaggc 60
          |||||||||| ||||||||||||| |||||||||||||||   ||| ||||| |||||||
Sbjct: 1  gagaatcatccctcccagataatgacactctcaaacaagtactcaagttgttggaaaggc 60

                         
Query: 61 tatttcttggtcaga 75
          |||||| ||||||||
Sbjct: 61 tatttcctggtcaga 75