miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00698;mir-489;ABRN01117807.1/20359-20268 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 92
Score = 127 bits (64), Expect = 2e-29
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatca 60
|||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||
Sbjct: 3 gtggcagcttggtggtcgtatgtgtggcgccatctactggaacctttaggagtgacatca 62
Query: 61 catatacggcagctaaactgctac 84
||||||||| |||||||||||||
Sbjct: 63 catatacggtggctaaactgctac 86
>RF00698;mir-489;AAGW01691909.1/791-700 9986:Oryctolagus cuniculus
(rabbit)
Length = 92
Score = 119 bits (60), Expect = 6e-27
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatca 60
|||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||
Sbjct: 3 gtggcagcttggtggtcgtatgtgtggtgccattcacttgaacctttaggggtgacatca 62
Query: 61 catatacggcagctaaactgctac 84
||||||||| |||||||||||||
Sbjct: 63 catatacggtggctaaactgctac 86
>RF00698;mir-489;AAQR01063642.1/2143-2052 30611:Otolemur garnettii
(small-eared galago)
Length = 92
Score = 111 bits (56), Expect = 1e-24
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatca 60
||||||||||||| | |||||||||| ||||||||||||||| |||||| ||||||||||
Sbjct: 3 gtggcagcttggtagccgtatgtgtggcgccatttacttgaatctttagaagtgacatca 62
Query: 61 catatacggcagctaaactgctac 84
||| |||||||||||| |||||||
Sbjct: 63 catgtacggcagctaatctgctac 86
>RF00698;mir-489;ABRQ01031627.1/5609-5518 9813:Procavia capensis
(cape rock hyrax)
Length = 92
Score = 107 bits (54), Expect = 2e-23
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatca 60
|||||||||||||||||||||||||| |||||||| ||||||| ||| |||||||||||
Sbjct: 3 gtggcagcttggtggtcgtatgtgtggcgccatttgcttgaactcttatgagtgacatca 62
Query: 61 catatacggcagctaaactgct 82
||||||||| |||||||||||
Sbjct: 63 catatacggtggctaaactgct 84
>RF00698;mir-489;ABVD01342338.1/2688-2597 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 92
Score = 87.7 bits (44), Expect = 2e-17
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatca 60
|||||||||||| |||||||||||| ||||||| ||||| ||| || |||||||||||
Sbjct: 3 gtggcagcttggcagtcgtatgtgtggtgccattttcttgaccctctatgagtgacatca 62
Query: 61 catatacggcagctaaactgctac 84
||||||||| |||||||||||||
Sbjct: 63 catatacggtggctaaactgctac 86
>RF00698;mir-489;AAWZ01021558.1/191255-191164 28377:Anolis
carolinensis (green anole)
Length = 92
Score = 85.7 bits (43), Expect = 8e-17
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 7 gcttggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatcacatata 66
||||||||||||||||| ||||| |||||||||| | |||||||||||||||| || ||
Sbjct: 9 gcttggtggtcgtatgtatgacgtcatttacttgttcttttaggagtgacatcatatgta 68
Query: 67 cggcagctaaactgc 81
|||| ||||||||||
Sbjct: 69 cggctgctaaactgc 83
>RF00698;mir-489;ABDC01215275.1/2133-2041 30608:Microcebus murinus
(gray mouse lemur)
Length = 93
Score = 81.8 bits (41), Expect = 1e-15
Identities = 75/85 (88%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtgacgccattta-cttgaacctttaggagtgacatc 59
|||||||||| || || |||| || | ||||||||| ||||||||||||| |||||||||
Sbjct: 3 gtggcagcttcgttgttgtatatgcggcgccatttaacttgaacctttagtagtgacatc 62
Query: 60 acatatacggcagctaaactgctac 84
|||||||||||| |||| |||||||
Sbjct: 63 acatatacggcaactaagctgctac 87
>RF00698;mir-489;BAAE01010852.1/933-843 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 66/76 (86%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 10 tggtggtcgtatgtgtgacgccatttactt-gaacctttaggagtgacatcacatatacg 68
|||||||||||||| ||||| ||||||||| || ||| |||||||||||| || ||||
Sbjct: 12 tggtggtcgtatgtatgacgtcatttacttcgatgctt--ggagtgacatcatatgtacg 69
Query: 69 gcagctaaactgctac 84
|| |||||||||||||
Sbjct: 70 gctgctaaactgctac 85
>RF00698;mir-489;AANN01186766.1/1891-1982 9365:Erinaceus europaeus
(western European hedgehog)
Length = 92
Score = 54.0 bits (27), Expect = 3e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatca 60
||||||| |||||||| ||||||||| | || ||||| ||| |||| |||||||||||
Sbjct: 3 gtggcagtttggtggttgtatgtgtggcatcacttactggaatttttatgagtgacatca 62
Query: 61 catatac 67
|||||||
Sbjct: 63 catatac 69
>RF00698;mir-489;AAQQ01558075.1/3986-3895 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 92
Score = 54.0 bits (27), Expect = 3e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 31 catttacttgaacctttaggagtgacatcacatatacggcagctaaactgc 81
||||||||||||| ||| | |||||||||| |||| | |||||||||||||
Sbjct: 33 catttacttgaacttttggaagtgacatcaaatatccagcagctaaactgc 83
>RF00698;mir-489;AAHX01028271.1/83263-83172 10116:Rattus
norvegicus (Norway rat)
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 53 tgacatcacatatacggcagctaaactg 80
|||||||||||||| |||||||||||||
Sbjct: 55 tgacatcacatatatggcagctaaactg 82
