miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00862;mir-491;AAKN02025646.1/25933-25850 10141:Cavia porcellus
(domestic guinea pig)
Length = 84
Score = 135 bits (68), Expect = 1e-31
Identities = 80/84 (95%)
Strand = Plus / Plus
Query: 1 ttgacttagctgggtagtggggaacccttccatgaggagtagaacactccttatgcaaga 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 ttgacttagctgggcagtggggaacccttccatgaggagtagaacactccttatgtaaga 60
Query: 61 ttcccttctacctggctgggttgg 84
||||| ||| ||||||||||||||
Sbjct: 61 ttcccctctgcctggctgggttgg 84
>RF00862;mir-491;CR937052.2/62844-62927 10116:Rattus norvegicus
(Norway rat)
Length = 84
Score = 125 bits (63), Expect = 9e-29
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 1 ttgacttagctgggtagtggggaacccttccatgaggagtagaacactccttatgcaaga 60
|||||||||||||| |||||||||| ||||| ||||||||||| |||||||||||| |||
Sbjct: 1 ttgacttagctgggaagtggggaacacttccgtgaggagtagagcactccttatgccaga 60
Query: 61 ttcccttctacctggctgggttg 83
|||||||||||||||||||||||
Sbjct: 61 ttcccttctacctggctgggttg 83
>RF00862;mir-491;ABRO01065492.1/742-825 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 84
Score = 117 bits (59), Expect = 2e-26
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 2 tgacttagctgggtagtggggaacccttccatgaggagtagaacactccttatgcaagat 61
|||||||||||| | ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 2 tgacttagctggatggtggggaacccttccatgaggagaataacactccttatgcaagat 61
Query: 62 tcccttctacctggctgggttgg 84
||||||| ||||| |||||||||
Sbjct: 62 tcccttccacctgactgggttgg 84
>RF00862;mir-491;ABRQ01242560.1/797-877 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 97.6 bits (49), Expect = 2e-20
Identities = 76/81 (93%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 2 tgacttagctgggtagtggggaacccttccatgaggagtagaacactccttatgcaagat 61
||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||
Sbjct: 2 tgacttagctgggtagtggggaa-ccttccatgaggagtcgaacact-cttatgcaagat 59
Query: 62 tcccttctacctggctgggtt 82
| ||||||||||| |||||||
Sbjct: 60 t-ccttctacctgactgggtt 79
>RF00862;mir-491;AAIY01312167.1/1228-1146 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 83
Score = 46.1 bits (23), Expect = 7e-05
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1 ttgacttagctgggtagtggggaacccttccatgaggagtagaacac 47
|||| |||||| |||||||||||||| | ||| |||||||||||||
Sbjct: 1 ttgatttagctaggtagtggggaaccttcccacaaggagtagaacac 47
