miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054368.1/310-390 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 145 bits (73), Expect = 1e-34
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 1 gatactcgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 gatacttgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatgcacg 60
Query: 61 ggaaacctcttttttagtatc 81
|||||||||||||||||||||
Sbjct: 61 ggaaacctcttttttagtatc 81
>RF00641;mir-154;AADB02234050.1/241-320 9606:Homo sapiens (human)
Length = 80
Score = 135 bits (68), Expect = 9e-32
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 10 aggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacgggaaacctc 69
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 aggaaaggttgtccgtgttgtcttctctttatttatgatgaaacatacacgggaaacctc 68
Query: 70 ttttttagtatc 81
||||||||||||
Sbjct: 69 ttttttagtatc 80
>RF00641;mir-154;AAGW01441521.1/639-716 9986:Oryctolagus cuniculus
(rabbit)
Length = 78
Score = 63.9 bits (32), Expect = 3e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 1 gatactcgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 60
|||||| || || |||| |||| ||| |||||||||||||||| |||||||||||||| |
Sbjct: 1 gatacttgacggggaggctgtctgtgctgtcttctctttatttttgatgaaacatacagg 60
Query: 61 ggaa 64
||||
Sbjct: 61 ggaa 64
>RF00641;mir-154;AAWR02020065.1/25372-25448 9796:Equus caballus
(horse)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 41/46 (89%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 13 agaggttgtccgtgttgtcttctctttatttatgatgaaacataca 58
||||||| || ||||| ||||| ||||||||||||||||| |||||
Sbjct: 12 agaggttatctgtgtt-tcttcgctttatttatgatgaaaaataca 56
