miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAKN02051949.1/128730-128808 10141:Cavia
porcellus (domestic guinea pig)
Length = 79
Score = 141 bits (71), Expect = 2e-33
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 10 ggtactcgaatggaggttgtccatggtgtgttcattttatttatgatgagtattacatgg 69
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtacttgaatggaggttgtccatggtgtgttcattttatttatgatgagtattacatgg 60
Query: 70 ccaatctcctttcggtact 88
|||||||| ||||||||||
Sbjct: 61 ccaatctcttttcggtact 79
>RF00641;mir-154;CAAA01088157.1/5550-5472 10090:Mus musculus
(house mouse)
Length = 79
Score = 131 bits (66), Expect = 2e-30
Identities = 69/70 (98%)
Strand = Plus / Plus
Query: 15 tcgaatggaggttgtccatggtgtgttcattttatttatgatgagtattacatggccaat 74
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tcgaatggaggttgcccatggtgtgttcattttatttatgatgagtattacatggccaat 65
Query: 75 ctcctttcgg 84
||||||||||
Sbjct: 66 ctcctttcgg 75
>RF00641;mir-154;ABRQ01054377.1/2348-2427 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 101 bits (51), Expect = 2e-21
Identities = 73/79 (92%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 11 gtactcgaatggaggttgtccatggtgtgttcatt-ttatttatgatgagtattacatgg 69
||||| |||||||||| |||||||||||||||||| ||||| ||||||| ||||||||||
Sbjct: 2 gtacttgaatggaggtagtccatggtgtgttcattcttattaatgatgattattacatgg 61
Query: 70 ccaatctcctttcggtact 88
||||||||||||| |||||
Sbjct: 62 ccaatctcctttcagtact 80
>RF00641;mir-154;AANN01387447.1/1902-1824 9365:Erinaceus europaeus
(western European hedgehog)
Length = 79
Score = 60.0 bits (30), Expect = 6e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 21 ggaggttgtccatggtgtgttcattttatttatgatgagtattacatggccaatctcc 78
||||| || ||| |||||||||||||| || | ||||||||||||||||||| |||||
Sbjct: 12 ggaggctggccacggtgtgttcattttcttcacgatgagtattacatggccagtctcc 69
