miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00745;mir-499;ABRQ01106311.1/1341-1429 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 153 bits (77), Expect = 6e-37
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 19 tgggcgggcggctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcaca 78
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgggcgggcagccgttaagacttgcagtgatgtttaactcctctccacgtgaacatcaca 61
Query: 79 gcaagtctgtgctgcttcccgtccc 103
|||||||||||||||||||||||||
Sbjct: 62 gcaagtctgtgctgcttcccgtccc 86
>RF00745;mir-499;AAHY01022368.1/76934-77022 10090:Mus musculus
(house mouse)
Length = 89
Score = 113 bits (57), Expect = 5e-25
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 18 ttgggcgggcggctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcac 77
||||| |||| |||||||||||||||||||||||||| ||||||| || |||||||||||
Sbjct: 1 ttgggtgggcagctgttaagacttgcagtgatgtttagctcctctgcatgtgaacatcac 60
Query: 78 agcaagtctgtgctgct 94
|||||||||||||||||
Sbjct: 61 agcaagtctgtgctgct 77
>RF00745;mir-499;AALT01096934.1/620-533 42254:Sorex araneus
(European shrew)
Length = 88
Score = 109 bits (55), Expect = 9e-24
Identities = 71/75 (94%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 20 gggcgggcggctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcacag 79
||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3 gggcgggtggccgttaagacttgcagtgatgtttaactcctc-acacgtgaacatcacag 61
Query: 80 caagtctgtgctgct 94
|||||||||||||||
Sbjct: 62 caagtctgtgctgct 76
>RF00745;mir-499;AAIY01738857.1/91-1 9371:Echinops telfairi (small
Madagascar hedgehog)
Length = 91
Score = 103 bits (52), Expect = 5e-22
Identities = 68/72 (94%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 33 ttaagacttgcagtgatgtttaa-ctcctctccacgtgaacatcacagcaagtctgtgct 91
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct: 17 ttaagacttgcagtgatgtttaaacttctgtccacgtgaacatcacagcaagtctgtgct 76
Query: 92 gcttcccgtccc 103
||||| ||||||
Sbjct: 77 gcttctcgtccc 88
>RF00745;mir-499;AAPN01135512.1/158-246 9258:Ornithorhynchus
anatinus (platypus)
Length = 89
Score = 99.6 bits (50), Expect = 8e-21
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 19 tgggcgggcggctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcaca 78
|||| |||| || ||||||||||| ||||||||||| ||| ||||||||||||||||||
Sbjct: 2 tgggggggcagcggttaagacttgtagtgatgtttagctcatctccacgtgaacatcact 61
Query: 79 gcaagtctgtgctgcttc 96
||||||||||||||||||
Sbjct: 62 gcaagtctgtgctgcttc 79
>RF00745;mir-499;AAFR03012197.1/530-442 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 89
Score = 85.7 bits (43), Expect = 1e-16
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 20 gggcgggcggctgttaagacttgcagtgatgtttaactcctctccacgtgaacatcacag 79
|||||||| ||||||||||||||||||||||||||| || |||| | ||||||||||||
Sbjct: 3 gggcgggcagctgttaagacttgcagtgatgtttaattcttctctatgtgaacatcacaa 62
Query: 80 caagtct 86
|||||||
Sbjct: 63 caagtct 69
>RF00745;mir-499;AAWZ01003580.1/63985-64074 28377:Anolis
carolinensis (green anole)
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 gttaagacttgcagtgatgttta 54
|||||||||||||||||||||||
Sbjct: 15 gttaagacttgcagtgatgttta 37
>RF00745;mir-499;CR555298.10/129727-129639 7955:Danio rerio
(zebrafish)
Length = 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 gttaagacttgcagtgatgttta 54
|||||||||||||||||||||||
Sbjct: 15 gttaagacttgcagtgatgttta 37
>RF00745;mir-499;CR847953.10/25811-25900 7955:Danio rerio
(zebrafish)
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 gttaagacttgcagtgatgttta 54
|||||||||||||||||||||||
Sbjct: 15 gttaagacttgcagtgatgttta 37
>RF00745;mir-499;AANH01006124.1/24032-23943 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 gttaagacttgcagtgatgttta 54
|||||||||||||||||||||||
Sbjct: 15 gttaagacttgcagtgatgttta 37
>RF00745;mir-499;BAAF04004562.1/510-599 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 gttaagacttgcagtgatgttta 54
|||||||||||||||||||||||
Sbjct: 15 gttaagacttgcagtgatgttta 37
