miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00745;mir-499;ABRQ01106311.1/1341-1429 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 131 bits (66), Expect = 1e-30
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 1 ggaagcagcacagacttgctgtgatgttcacgtggagaggagttaaacatcactgcaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 ggaagcagcacagacttgctgtgatgttcacgtggagaggagttaaacatcactgcaagt 21
Query: 61 cttaac 66
||||||
Sbjct: 20 cttaac 15
>RF00745;mir-499;AAHY01022368.1/76934-77022 10090:Mus musculus
(house mouse)
Length = 89
Score = 107 bits (54), Expect = 2e-23
Identities = 63/66 (95%)
Strand = Plus / Minus
Query: 4 agcagcacagacttgctgtgatgttcacgtggagaggagttaaacatcactgcaagtctt 63
|||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||
Sbjct: 77 agcagcacagacttgctgtgatgttcacatgcagaggagctaaacatcactgcaagtctt 18
Query: 64 aacagc 69
||||||
Sbjct: 17 aacagc 12
>RF00745;mir-499;AALT01096934.1/620-533 42254:Sorex araneus
(European shrew)
Length = 88
Score = 101 bits (51), Expect = 1e-21
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 4 agcagcacagacttgctgtgatgttcacgtggagaggagttaaacatcactgcaagtctt 63
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 76 agcagcacagacttgctgtgatgttcacgt-gtgaggagttaaacatcactgcaagtctt 18
Query: 64 aac 66
|||
Sbjct: 17 aac 15
>RF00745;mir-499;AAPN01135512.1/158-246 9258:Ornithorhynchus
anatinus (platypus)
Length = 89
Score = 97.6 bits (49), Expect = 2e-20
Identities = 61/65 (93%)
Strand = Plus / Minus
Query: 2 gaagcagcacagacttgctgtgatgttcacgtggagaggagttaaacatcactgcaagtc 61
|||||||||||||||||| |||||||||||||||||| ||| ||||||||||| ||||||
Sbjct: 79 gaagcagcacagacttgcagtgatgttcacgtggagatgagctaaacatcactacaagtc 20
Query: 62 ttaac 66
|||||
Sbjct: 19 ttaac 15
>RF00745;mir-499;AAIY01738857.1/91-1 9371:Echinops telfairi (small
Madagascar hedgehog)
Length = 91
Score = 97.6 bits (49), Expect = 2e-20
Identities = 62/65 (95%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 2 gaagcagcacagacttgctgtgatgttcacgtggagaggag-ttaaacatcactgcaagt 60
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct: 81 gaagcagcacagacttgctgtgatgttcacgtggacagaagtttaaacatcactgcaagt 22
Query: 61 cttaa 65
|||||
Sbjct: 21 cttaa 17
>RF00745;mir-499;AAFR03012197.1/530-442 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 89
Score = 75.8 bits (38), Expect = 7e-14
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 12 agacttgctgtgatgttcacgtggagaggagttaaacatcactgcaagtcttaacagc 69
||||||| |||||||||||| | |||| || |||||||||||||||||||||||||||
Sbjct: 69 agacttgttgtgatgttcacatagagaagaattaaacatcactgcaagtcttaacagc 12
>RF00745;mir-499;AAWZ01003580.1/63985-64074 28377:Anolis
carolinensis (green anole)
Length = 90
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 44 taaacatcactgcaagtcttaac 66
|||||||||||||||||||||||
Sbjct: 37 taaacatcactgcaagtcttaac 15
>RF00745;mir-499;CR555298.10/129727-129639 7955:Danio rerio
(zebrafish)
Length = 89
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 44 taaacatcactgcaagtcttaac 66
|||||||||||||||||||||||
Sbjct: 37 taaacatcactgcaagtcttaac 15
>RF00745;mir-499;CR847953.10/25811-25900 7955:Danio rerio
(zebrafish)
Length = 90
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 44 taaacatcactgcaagtcttaac 66
|||||||||||||||||||||||
Sbjct: 37 taaacatcactgcaagtcttaac 15
>RF00745;mir-499;AANH01006124.1/24032-23943 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 44 taaacatcactgcaagtcttaac 66
|||||||||||||||||||||||
Sbjct: 37 taaacatcactgcaagtcttaac 15
>RF00745;mir-499;BAAF04004562.1/510-599 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 44 taaacatcactgcaagtcttaac 66
|||||||||||||||||||||||
Sbjct: 37 taaacatcactgcaagtcttaac 15
>RF00745;mir-499;AADN02019434.1/12769-12858 9031:Gallus gallus
(chicken)
Length = 90
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 44 taaacatcactgcaagtcttaacagccgc 72
||||||||||| ||||||||||| |||||
Sbjct: 37 taaacatcactacaagtcttaactgccgc 9
