miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01903;mir-500;AANU01113554.1/19321-19232 9544:Macaca mulatta
(rhesus monkey)
Length = 90
Score = 149 bits (75), Expect = 6e-36
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 ccccctgtctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 68
Query: 61 aaggattctgcaaggggga 79
|||||||||||||||||||
Sbjct: 69 aaggattctgcaaggggga 87
>RF01903;mir-500;AAPY01377727.1/1385-1474 37347:Tupaia belangeri
(northern tree shrew)
Length = 90
Score = 117 bits (59), Expect = 2e-26
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 5 ctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaagg 64
|||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||
Sbjct: 13 ctctctaatccttgctacctgggtgagagtgctttctgaatgcaattcacctaggcaagg 72
Query: 65 attctgcaaggggga 79
||||||| |||||||
Sbjct: 73 attctgcgaggggga 87
>RF01903;mir-500;ABRR01444762.1/851-940 30538:Lama pacos (alpaca)
Length = 90
Score = 107 bits (54), Expect = 2e-23
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 60
||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||
Sbjct: 9 ccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggc 68
Query: 61 aaggattctg 70
||||||||||
Sbjct: 69 aaggattctg 78
>RF01903;mir-500;AAKN02053571.1/48125-48214 10141:Cavia porcellus
(domestic guinea pig)
Length = 90
Score = 107 bits (54), Expect = 2e-23
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 9 ccccctctctaatccttgctacctgggtgagagtgctttgtgaatgcagtgcacctgggc 68
Query: 61 aaggattctg 70
|||| |||||
Sbjct: 69 aagggttctg 78
>RF01903;mir-500;AAQQ01366224.1/356-445 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 90
Score = 95.6 bits (48), Expect = 8e-20
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 60
||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||
Sbjct: 9 ccccctctctaatccttgctatctgggtgagagtgctttccgaatgcagtgcacctgggc 68
Query: 61 aagg 64
||||
Sbjct: 69 aagg 72
>RF01903;mir-500;AAGW01126437.1/5760-5849 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 95.6 bits (48), Expect = 8e-20
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 60
||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||
Sbjct: 9 ccccctctctaatccttgctacctgggtgagagtgctaactgaatgcaatgcacctgggc 68
Query: 61 aaggattc 68
||||||||
Sbjct: 69 aaggattc 76
>RF01903;mir-500;CABD01395115.2/3352-3441 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 90
Score = 85.7 bits (43), Expect = 7e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 4 cctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaag 63
||||||||||| || | ||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 12 cctctctaatcgtttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 71
Query: 64 gattctg 70
|||||||
Sbjct: 72 gattctg 78
>RF01903;mir-500;ABRT010259438.1/4434-4523 9478:Tarsius syrichta
(Philippine tarsier)
Length = 90
Score = 81.8 bits (41), Expect = 1e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 4 cctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaag 63
|||||||||||||| | |||||||||||||||||||| |||||| ||||||| ||||||
Sbjct: 12 cctctctaatcctttgtccctgggtgagagtgctttctaaatgcaatgcacccgggcaag 71
Query: 64 gattc 68
|||||
Sbjct: 72 gattc 76
>RF01903;mir-500;AALT01601729.1/736-647 42254:Sorex araneus
(European shrew)
Length = 90
Score = 75.8 bits (38), Expect = 7e-14
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 5 ctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaagg 64
|||||||||||||||||||||||||||| |||||| |||||| |||||| |||||||
Sbjct: 13 ctctctaatccttgctacctgggtgagaatgcttttgaaatgcaatgcacctgggcaagg 72
Query: 65 attctgcaaggggg 78
||||| |||||||
Sbjct: 73 attctagaaggggg 86
>RF01903;mir-500;AAGU02358869.1/7585-7674 9785:Loxodonta africana
(African savanna elephant)
Length = 90
Score = 71.9 bits (36), Expect = 1e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 5 ctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaagg 64
||||||||||||||||| ||||||| |||||| ||| |||||| |||||| ||||||||
Sbjct: 13 ctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctaggcaagg 72
Query: 65 attc 68
||||
Sbjct: 73 attc 76
>RF01903;mir-500;AAKN02053571.1/47619-47708 10141:Cavia porcellus
(domestic guinea pig)
Length = 90
Score = 69.9 bits (35), Expect = 4e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 4 cctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaag 63
|||||||||||||| | |||| |||||| ||||||| ||||||||||| ||||||||||
Sbjct: 12 cctctctaatcctttgtccctgagtgagaatgctttcagaatgcagtgctcccaggcaag 71
Query: 64 gattctg 70
| |||||
Sbjct: 72 ggttctg 78
>RF01903;mir-500;AAWR02023860.1/12501-12589 9796:Equus caballus
(horse)
Length = 89
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 3 ccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaa 62
|||||||| |||||| | ||||||||||||||||||| ||||||| |||||| |||||
Sbjct: 11 ccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctgggcaa 70
Query: 63 ggattc 68
||||||
Sbjct: 71 ggattc 76
>RF01903;mir-500;AALT01601729.1/2904-2815 42254:Sorex araneus
(European shrew)
Length = 90
Score = 65.9 bits (33), Expect = 7e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 3 ccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacc 55
||||||| |||||||| ||||||||||||| ||||||| ||||||| ||||||
Sbjct: 11 ccctctcgaatccttgttacctgggtgagaatgctttcagaatgcaatgcacc 63
>RF01903;mir-500;AAFC03003598.1/91611-91523 9913:Bos taurus
(cattle)
Length = 89
Score = 65.9 bits (33), Expect = 7e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 2 cccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggca 61
|||||||||||| |||||| || |||||||||||||| |||||||| | |||| ||||
Sbjct: 9 cccctctctaattcttgctccccaggtgagagtgctttgtgaatgcaatccacctgggca 68
Query: 62 aggattctg 70
|||||||||
Sbjct: 69 aggattctg 77
>RF01903;mir-500;AALT01601729.1/3692-3602 42254:Sorex araneus
(European shrew)
Length = 91
Score = 63.9 bits (32), Expect = 3e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 5 ctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaagg 64
|||||||||||||||||||||| || |||||||||| ||||| |||||| |||||||
Sbjct: 13 ctctctaatccttgctacctggttgctagtgctttctatatgcaatgcacctgggcaagg 72
Query: 65 attc 68
||||
Sbjct: 73 attc 76
>RF01903;mir-500;AAPY01377726.1/2576-2664 37347:Tupaia belangeri
(northern tree shrew)
Length = 89
Score = 56.0 bits (28), Expect = 7e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 2 cccctctctaatccttgctacctgggtgagagtgct 37
||||| ||||||||||||||||||||||||| ||||
Sbjct: 9 cccctatctaatccttgctacctgggtgagaatgct 44
>RF01903;mir-500;AAKN02053571.1/46149-46243 10141:Cavia porcellus
(domestic guinea pig)
Length = 95
Score = 52.0 bits (26), Expect = 1e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 8 tctaatccttgctacctgggtgagagtgctttctgaatgcagtgca 53
|||||||||||||||| | ||||||||||| ||| |||||| ||||
Sbjct: 16 tctaatccttgctacccgagtgagagtgctgtctcaatgcaatgca 61
>RF01903;mir-500;AAGU02358869.1/3530-3617 9785:Loxodonta africana
(African savanna elephant)
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcac 54
|||| |||||||||||| |||||||||| | ||||| ||| ||||||||||||
Sbjct: 9 ccccttctctaatccttagtacctgggtgtgggtgctgtctcaatgcagtgcac 62
>RF01903;mir-500;AL663104.17/15029-14940 10090:Mus musculus (house
mouse)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 4 cctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaag 63
|||||||||||||| | ||||||||| | |||| | || ||||| ||||||| ||||||
Sbjct: 12 cctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccgggcaag 71
Query: 64 gatt 67
||||
Sbjct: 72 gatt 75
>RF01903;mir-500;ABRO01329853.1/364-457 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 58/69 (84%), Gaps = 4/69 (5%)
Strand = Plus / Plus
Query: 4 cctctctaatccttgctacctgggtgaga----gtgctttctgaatgcagtgcacccagg 59
|||||||||||||| | ||||||||||| ||||||||||||||| |||||| ||
Sbjct: 12 cctctctaatcctttgtccctgggtgagaatgcttgctttctgaatgcaatgcacctggg 71
Query: 60 caaggattc 68
|||||||||
Sbjct: 72 caaggattc 80
>RF01903;mir-500;AAIY01038584.1/399-317 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 23 ctgggtgagagtgctttctgaatgcagtgcacccaggcaaggattctg 70
||||||| |||||| ||| |||||| ||||||||||||| |||||||
Sbjct: 27 ctgggtgctagtgctatctcaatgcaatgcacccaggcaaagattctg 74
>RF01903;mir-500;ABRP01179571.1/608-696 132908:Pteropus vampyrus
(large flying fox)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 1 ccccctctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggc 60
|||||||||| |||||| | |||| ||||||||||||| |||||| ||||| |||
Sbjct: 9 ccccctctctcatcctttgtctctggttgagagtgctttcaaaatgcaatgcactggggc 68
Query: 61 aaggattctg 70
||||||||||
Sbjct: 69 aaggattctg 78
>RF01903;mir-500;AAFC03003598.1/85766-85678 9913:Bos taurus
(cattle)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 7 ctctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaaggat 66
|||||||||||||| ||||||| |||||| ||| ||||| |||||| |||||||||
Sbjct: 14 ctctaatccttgctctctgggtgctagtgctgtctccatgcaatgcacctgggcaaggat 73
Query: 67 tc 68
||
Sbjct: 74 tc 75
>RF01903;mir-500;AAEX02025396.1/212337-212249 9615:Canis lupus
familiaris (dog)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 22 cctgggtgagagtgctttctgaatgcagtgcacc 55
|||| ||||||||||||||| |||||| ||||||
Sbjct: 30 cctgagtgagagtgctttctaaatgcaatgcacc 63
