miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01903;mir-500;CABD01395115.2/3352-3441 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 90
Score = 159 bits (80), Expect = 7e-39
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 gctcttcctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccg 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gctcttcctctctaatcgtttgtccctgggtgagagtgctttctgaatgcaatgcacccg 65
Query: 61 ggcaaggattctgagagggtgagc 84
||||||||||||||||||||||||
Sbjct: 66 ggcaaggattctgagagggtgagc 89
>RF01903;mir-500;ABRT010259438.1/4434-4523 9478:Tarsius syrichta
(Philippine tarsier)
Length = 90
Score = 131 bits (66), Expect = 2e-30
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 6 tcctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaa 65
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 11 tcctctctaatcctttgtccctgggtgagagtgctttctaaatgcaatgcacccgggcaa 70
Query: 66 ggattctgagaggg 79
|||||| |||||||
Sbjct: 71 ggattccgagaggg 84
>RF01903;mir-500;AAWR02023860.1/12501-12589 9796:Equus caballus
(horse)
Length = 89
Score = 101 bits (51), Expect = 1e-21
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 1 gctcttcctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccg 60
||||| ||||||| |||||| |||||||||||||||||||||| |||||||||||||| |
Sbjct: 6 gctctccctctctcatccttcgtccctgggtgagagtgctttccgaatgcaatgcacctg 65
Query: 61 ggcaaggattc 71
|||||||||||
Sbjct: 66 ggcaaggattc 76
>RF01903;mir-500;ABRR01444762.1/851-940 30538:Lama pacos (alpaca)
Length = 90
Score = 101 bits (51), Expect = 1e-21
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||||||| | |||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 12 cctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaag 71
Query: 67 gattctgagag 77
|||||||||||
Sbjct: 72 gattctgagag 82
>RF01903;mir-500;ABRO01329853.1/364-457 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 94
Score = 99.6 bits (50), Expect = 5e-21
Identities = 78/87 (89%), Gaps = 4/87 (4%)
Strand = Plus / Plus
Query: 1 gctcttcctctctaatcctttgtccctgggtgaga----gtgctttctgaatgcaatgca 56
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6 gctcctcctctctaatcctttgtccctgggtgagaatgcttgctttctgaatgcaatgca 65
Query: 57 cccgggcaaggattctgagagggtgag 83
|| |||||||||||| ||||||||||
Sbjct: 66 cctgggcaaggattccaagagggtgag 92
>RF01903;mir-500;AAKN02053571.1/47619-47708 10141:Cavia porcellus
(domestic guinea pig)
Length = 90
Score = 95.6 bits (48), Expect = 8e-20
Identities = 75/84 (89%)
Strand = Plus / Plus
Query: 1 gctcttcctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccg 60
|||| ||||||||||||||||||||||| |||||| ||||||| ||||||| ||| |||
Sbjct: 6 gctcctcctctctaatcctttgtccctgagtgagaatgctttcagaatgcagtgctccca 65
Query: 61 ggcaaggattctgagagggtgagc 84
||||||| ||||||||||| ||||
Sbjct: 66 ggcaagggttctgagagggcgagc 89
>RF01903;mir-500;AL663104.17/15029-14940 10090:Mus musculus (house
mouse)
Length = 90
Score = 91.7 bits (46), Expect = 1e-18
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 1 gctcttcctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccg 60
|||| |||||||||||||||||||||||||||| | |||| | || ||||||||||||||
Sbjct: 6 gctcatcctctctaatcctttgtccctgggtgaaaatgctatttgtatgcaatgcacccg 65
Query: 61 ggcaaggatt 70
||||||||||
Sbjct: 66 ggcaaggatt 75
>RF01903;mir-500;AAPY01377727.1/1385-1474 37347:Tupaia belangeri
(northern tree shrew)
Length = 90
Score = 89.7 bits (45), Expect = 5e-18
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 8 ctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaagg 67
||||||||||||| | ||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 13 ctctctaatccttgctacctgggtgagagtgctttctgaatgcaattcacctaggcaagg 72
Query: 68 attctgagagggtgagc 84
|||||| ||||| ||||
Sbjct: 73 attctgcgagggggagc 89
>RF01903;mir-500;AANU01113554.1/19321-19232 9544:Macaca mulatta
(rhesus monkey)
Length = 90
Score = 85.7 bits (43), Expect = 8e-17
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 11 tctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaaggatt 70
|||||||||| | ||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 16 tctaatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaaggatt 75
Query: 71 ctg 73
|||
Sbjct: 76 ctg 78
>RF01903;mir-500;AAGW01126437.1/5760-5849 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 85.7 bits (43), Expect = 8e-17
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||||||| | |||||||||||||||| |||||||||||||||| |||||||
Sbjct: 12 cctctctaatccttgctacctgggtgagagtgctaactgaatgcaatgcacctgggcaag 71
Query: 67 gattctgagag 77
||||| |||||
Sbjct: 72 gattcagagag 82
>RF01903;mir-500;ABRP01179571.1/608-696 132908:Pteropus vampyrus
(large flying fox)
Length = 89
Score = 83.8 bits (42), Expect = 3e-16
Identities = 70/78 (89%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
||||||| |||||||||| |||| ||||||||||||| |||||||||||| |||||||
Sbjct: 12 cctctctcatcctttgtctctggttgagagtgctttcaaaatgcaatgcactggggcaag 71
Query: 67 gattctgagagggtgagc 84
||||||| ||||||||||
Sbjct: 72 gattctg-gagggtgagc 88
>RF01903;mir-500;AAKN02053571.1/48125-48214 10141:Cavia porcellus
(domestic guinea pig)
Length = 90
Score = 77.8 bits (39), Expect = 2e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||||||| | |||||||||||||||||| |||||||| |||||| |||||||
Sbjct: 12 cctctctaatccttgctacctgggtgagagtgctttgtgaatgcagtgcacctgggcaag 71
Query: 67 gattctg 73
| |||||
Sbjct: 72 ggttctg 78
>RF01903;mir-500;AAFC03003598.1/91611-91523 9913:Bos taurus
(cattle)
Length = 89
Score = 71.9 bits (36), Expect = 1e-12
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||| ||| |||| |||||||||||||| |||||||||| |||| |||||||
Sbjct: 11 cctctctaattcttgctccccaggtgagagtgctttgtgaatgcaatccacctgggcaag 70
Query: 67 gattctga 74
||||||||
Sbjct: 71 gattctga 78
>RF01903;mir-500;AALT01601729.1/736-647 42254:Sorex araneus
(European shrew)
Length = 90
Score = 65.9 bits (33), Expect = 7e-11
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 8 ctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaagg 67
||||||||||||| | ||||||||||| |||||| ||||||||||||| ||||||||
Sbjct: 13 ctctctaatccttgctacctgggtgagaatgcttttgaaatgcaatgcacctgggcaagg 72
Query: 68 attct 72
|||||
Sbjct: 73 attct 77
>RF01903;mir-500;AAQQ01366224.1/356-445 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 90
Score = 65.9 bits (33), Expect = 7e-11
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaag 66
|||||||||||||| | |||||||||||||||||| ||||||| |||||| |||||||
Sbjct: 12 cctctctaatccttgctatctgggtgagagtgctttccgaatgcagtgcacctgggcaag 71
Query: 67 g 67
|
Sbjct: 72 g 72
>RF01903;mir-500;AAGU02358869.1/7585-7674 9785:Loxodonta africana
(African savanna elephant)
Length = 90
Score = 65.9 bits (33), Expect = 7e-11
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 8 ctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaagg 67
||||||||||||| | ||||||| |||||| ||| ||||||||||||| |||||||
Sbjct: 13 ctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctaggcaagg 72
Query: 68 attctgagagggtgagc 84
|||| ||||||||||||
Sbjct: 73 attcagagagggtgagc 89
>RF01903;mir-500;AAFC03003598.1/85766-85678 9913:Bos taurus
(cattle)
Length = 89
Score = 63.9 bits (32), Expect = 3e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 10 ctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaaggat 69
||||||||||| || ||||||| |||||| ||| |||||||||||| ||||||||||
Sbjct: 14 ctctaatccttgctctctgggtgctagtgctgtctccatgcaatgcacctgggcaaggat 73
Query: 70 tctgagagggtg 81
|| |||||||||
Sbjct: 74 tcagagagggtg 85
>RF01903;mir-500;AAEX02025396.1/212337-212249 9615:Canis lupus
familiaris (dog)
Length = 89
Score = 63.9 bits (32), Expect = 3e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 15 atcctttgtccctgggtgagagtgctttctgaatgcaatgcacc 58
||||| |||||||| ||||||||||||||| |||||||||||||
Sbjct: 20 atcctctgtccctgagtgagagtgctttctaaatgcaatgcacc 63
>RF01903;mir-500;AALT01601729.1/2904-2815 42254:Sorex araneus
(European shrew)
Length = 90
Score = 60.0 bits (30), Expect = 5e-09
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 7 cctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccggg-caa 65
|||||| ||||||| | ||||||||||| ||||||| |||||||||||||| ||| |||
Sbjct: 12 cctctcgaatccttgttacctgggtgagaatgctttcagaatgcaatgcacctgggacaa 71
Query: 66 ggattc 71
||||||
Sbjct: 72 ggattc 77
>RF01903;mir-500;AAIY01038584.1/399-317 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 83
Score = 58.0 bits (29), Expect = 2e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 26 ctgggtgagagtgctttctgaatgcaatgcacccgggcaaggattctgagagg 78
||||||| |||||| ||| |||||||||||||| ||||| ||||||||||||
Sbjct: 27 ctgggtgctagtgctatctcaatgcaatgcacccaggcaaagattctgagagg 79
>RF01903;mir-500;AALT01601729.1/3692-3602 42254:Sorex araneus
(European shrew)
Length = 91
Score = 56.0 bits (28), Expect = 7e-08
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 8 ctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaagg 67
||||||||||||| | ||||| || |||||||||| |||||||||||| ||||||||
Sbjct: 13 ctctctaatccttgctacctggttgctagtgctttctatatgcaatgcacctgggcaagg 72
Query: 68 attc 71
||||
Sbjct: 73 attc 76
>RF01903;mir-500;ABDC01288936.1/7113-7202 30608:Microcebus murinus
(gray mouse lemur)
Length = 90
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 47 atgcaatgcacccgggcaaggattctgagaggg 79
|||||||||||| |||||||||||| |||||||
Sbjct: 52 atgcaatgcacctgggcaaggattcagagaggg 84
>RF01903;mir-500;AAPY01377726.1/2576-2664 37347:Tupaia belangeri
(northern tree shrew)
Length = 89
Score = 46.1 bits (23), Expect = 7e-05
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 11 tctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaaggatt 70
|||||||||| | ||||||||||| |||| ||| |||||||| || || ||||||||
Sbjct: 15 tctaatccttgctacctgggtgagaatgctatctctgtgcaatgctcctggacaaggatt 74
Query: 71 ctgagag 77
|||||||
Sbjct: 75 ctgagag 81
>RF01903;mir-500;AAGU02358869.1/3530-3617 9785:Loxodonta africana
(African savanna elephant)
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 9 tctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccgggcaagga 68
|||||||||||| || |||||||| | ||||| ||| |||||| ||||| ||||||| |
Sbjct: 14 tctctaatccttagtacctgggtgtgggtgctgtctcaatgcagtgcacatgggcaagca 73
Query: 69 ttc 71
|||
Sbjct: 74 ttc 76
>RF01903;mir-500;AAGW01126437.1/3638-3727 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 59/70 (84%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 gctcttcctctctaatcctttgtccctgggtgagagtgctttctgaatgcaatgcacccg 60
|||||| ||||||||||||| | ||||| || |||||||||| ||||||||||| |
Sbjct: 6 gctctttctctctaatccttgatacctgg-tgttagtgctttctatgtgcaatgcacctg 64
Query: 61 ggcaaggatt 70
||||||||||
Sbjct: 65 ggcaaggatt 74
