miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01903;mir-500;AAGU02358869.1/7585-7674 9785:Loxodonta africana
(African savanna elephant)
Length = 90
Score = 139 bits (70), Expect = 6e-33
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 1 tgctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacct 60
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5 tgctccctctctctaatccttgctatctgggtgctagtgctgtctcaatgcaatgcacct 64
Query: 61 gggcaaggattcagagagggggagct 86
||||||||||||||||||| |||||
Sbjct: 65 aggcaaggattcagagagggtgagct 90
>RF01903;mir-500;AAFC03003598.1/85766-85678 9913:Bos taurus
(cattle)
Length = 89
Score = 115 bits (58), Expect = 9e-26
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 11 ctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggcaaggat 70
|||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 14 ctctaatccttgctctctgggtgctagtgctgtctccatgcaatgcacctgggcaaggat 73
Query: 71 tcagagaggg 80
||||||||||
Sbjct: 74 tcagagaggg 83
>RF01903;mir-500;ABDC01288936.1/7113-7202 30608:Microcebus murinus
(gray mouse lemur)
Length = 90
Score = 115 bits (58), Expect = 9e-26
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 1 tgctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacct 60
|||| ||||||||||||||||||| ||||||||||| ||||| || |||||||||||||
Sbjct: 5 tgcttcccctctctaatccttgctgtctgggtgctaatgctgtgtcgatgcaatgcacct 64
Query: 61 gggcaaggattcagagaggggg 82
||||||||||||||||||||||
Sbjct: 65 gggcaaggattcagagaggggg 86
>RF01903;mir-500;AAGW01126437.1/5760-5849 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 107 bits (54), Expect = 2e-23
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 1 tgctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacct 60
||||||||||||||||||||||||| ||||||| |||||| || ||||||||||||||
Sbjct: 5 tgctccccctctctaatccttgctacctgggtgagagtgctaactgaatgcaatgcacct 64
Query: 61 gggcaaggattcagagag 78
||||||||||||||||||
Sbjct: 65 gggcaaggattcagagag 82
>RF01903;mir-500;ABRR01444762.1/851-940 30538:Lama pacos (alpaca)
Length = 90
Score = 99.6 bits (50), Expect = 6e-21
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 5 ccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggc 64
||||||||||||||||||||| ||||||| ||||||| || ||||||||||||||||||
Sbjct: 9 ccccctctctaatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggc 68
Query: 65 aaggattcagagag 78
|||||||| |||||
Sbjct: 69 aaggattctgagag 82
>RF01903;mir-500;AALT01601729.1/3692-3602 42254:Sorex araneus
(European shrew)
Length = 91
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 9 ctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggcaagg 68
||||||||||||||||| |||| |||||||||| || |||||||||||||||||||||
Sbjct: 13 ctctctaatccttgctacctggttgctagtgctttctatatgcaatgcacctgggcaagg 72
Query: 69 attcagag 76
||||||||
Sbjct: 73 attcagag 80
>RF01903;mir-500;AAPY01377727.1/1385-1474 37347:Tupaia belangeri
(northern tree shrew)
Length = 90
Score = 79.8 bits (40), Expect = 5e-15
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 2 gctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctg 61
|||||| ||||||||||||||||| ||||||| |||||| || |||||||| |||||
Sbjct: 6 gctccctctctctaatccttgctacctgggtgagagtgctttctgaatgcaattcaccta 65
Query: 62 ggcaaggattcagagagggggagc 85
||||||||||| | ||||||||||
Sbjct: 66 ggcaaggattctgcgagggggagc 89
>RF01903;mir-500;AAQQ01366224.1/356-445 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 90
Score = 77.8 bits (39), Expect = 2e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 2 gctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctg 61
|||||||||||||||||||||||||||||||| |||||| | |||||| ||||||||
Sbjct: 6 gctccccctctctaatccttgctatctgggtgagagtgctttccgaatgcagtgcacctg 65
Query: 62 ggcaagg 68
|||||||
Sbjct: 66 ggcaagg 72
>RF01903;mir-500;AAKN02053571.1/48125-48214 10141:Cavia porcellus
(domestic guinea pig)
Length = 90
Score = 69.9 bits (35), Expect = 5e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 2 gctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctg 61
|||||||||||||||||||||||| ||||||| |||||| | |||||| ||||||||
Sbjct: 6 gctccccctctctaatccttgctacctgggtgagagtgctttgtgaatgcagtgcacctg 65
Query: 62 ggcaagg 68
|||||||
Sbjct: 66 ggcaagg 72
>RF01903;mir-500;AAIY01038584.1/399-317 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 83
Score = 63.9 bits (32), Expect = 3e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 24 tatctgggtgctagtgctggctcaatgcaatgcacctgggcaaggattcagagagg 79
|||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||
Sbjct: 24 tatctgggtgctagtgctatctcaatgcaatgcacccaggcaaagattctgagagg 79
>RF01903;mir-500;AANU01113554.1/19321-19232 9544:Macaca mulatta
(rhesus monkey)
Length = 90
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 2 gctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctg 61
||||||||| |||||||||||||| ||||||| |||||| || |||||| ||||||
Sbjct: 6 gctccccctgtctaatccttgctacctgggtgagagtgctttctgaatgcagtgcaccca 65
Query: 62 ggcaaggattc 72
|||||||||||
Sbjct: 66 ggcaaggattc 76
>RF01903;mir-500;AALT01601729.1/736-647 42254:Sorex araneus
(European shrew)
Length = 90
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 4 tccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctggg 63
|||| ||||||||||||||||| ||||||| | |||| |||||||||||||||||
Sbjct: 8 tccctctctctaatccttgctacctgggtgagaatgcttttgaaatgcaatgcacctggg 67
Query: 64 caaggattc 72
|||||||||
Sbjct: 68 caaggattc 76
>RF01903;mir-500;ABRT010259438.1/4434-4523 9478:Tarsius syrichta
(Philippine tarsier)
Length = 90
Score = 58.0 bits (29), Expect = 2e-08
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 8 cctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggcaag 67
|||||||||||||| | ||||||| |||||| || ||||||||||||| |||||||
Sbjct: 12 cctctctaatcctttgtccctgggtgagagtgctttctaaatgcaatgcacccgggcaag 71
Query: 68 gattcagagaggg 80
||||| |||||||
Sbjct: 72 gattccgagaggg 84
>RF01903;mir-500;CABD01395115.2/3352-3441 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 90
Score = 56.0 bits (28), Expect = 7e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 47 aatgcaatgcacctgggcaaggattcagagagggggagct 86
||||||||||||| |||||||||||| ||||||| |||||
Sbjct: 51 aatgcaatgcacccgggcaaggattctgagagggtgagct 90
>RF01903;mir-500;AAKN02053571.1/46149-46243 10141:Cavia porcellus
(domestic guinea pig)
Length = 95
Score = 56.0 bits (28), Expect = 7e-08
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 12 tctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggcaag 67
|||||||||||||| | | ||| ||||||| |||||||||||||| |||||||||
Sbjct: 16 tctaatccttgctacccgagtgagagtgctgtctcaatgcaatgcatctgggcaag 71
>RF01903;mir-500;ABRT010259437.1/774-863 9478:Tarsius syrichta
(Philippine tarsier)
Length = 90
Score = 54.0 bits (27), Expect = 3e-07
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 9 ctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggcaagg 68
|||| ||||||||| || |||| |||||||||| || |||||||| ||||||||||||
Sbjct: 13 ctctttaatccttgatacctgg-tgctagtgctttctacatgcaatggacctgggcaagg 71
Query: 69 attcaga 75
|||||||
Sbjct: 72 attcaga 78
>RF01903;mir-500;AAWR02023860.1/12501-12589 9796:Equus caballus
(horse)
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 47 aatgcaatgcacctgggcaaggattc 72
||||||||||||||||||||||||||
Sbjct: 51 aatgcaatgcacctgggcaaggattc 76
>RF01903;mir-500;ABRO01329853.1/364-457 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 94
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 47 aatgcaatgcacctgggcaaggattc 72
||||||||||||||||||||||||||
Sbjct: 55 aatgcaatgcacctgggcaaggattc 80
>RF01903;mir-500;AAGU02358869.1/3530-3617 9785:Loxodonta africana
(African savanna elephant)
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 3 ctccccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgg 62
|||||| |||||||||||| || ||||||| |||||| ||||||||| ||||| |||
Sbjct: 7 ctccccttctctaatccttagtacctgggtgtgggtgctgtctcaatgcagtgcacatgg 66
Query: 63 gcaaggattc 72
||||| ||||
Sbjct: 67 gcaagcattc 76
>RF01903;mir-500;AAPY01377726.1/2576-2664 37347:Tupaia belangeri
(northern tree shrew)
Length = 89
Score = 50.1 bits (25), Expect = 5e-06
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 6 cccctctctaatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggca 65
||||| |||||||||||||| ||||||| | |||| ||| |||||||| ||||| ||
Sbjct: 9 cccctatctaatccttgctacctgggtgagaatgctatctctgtgcaatgctcctggaca 68
Query: 66 aggattcagagag 78
||||||| |||||
Sbjct: 69 aggattctgagag 81
>RF01903;mir-500;AAKN02053571.1/44085-44175 10141:Cavia porcellus
(domestic guinea pig)
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 48 atgcaatgcacctgggcaaggattcagag 76
||||| |||||||||||||||||||||||
Sbjct: 52 atgcagtgcacctgggcaaggattcagag 80
>RF01903;mir-500;AAGW01126437.1/3638-3727 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 49 tgcaatgcacctgggcaaggattcagag 76
||||||||||||||||||||||| ||||
Sbjct: 52 tgcaatgcacctgggcaaggatttagag 79
>RF01903;mir-500;AAFC03003598.1/91611-91523 9913:Bos taurus
(cattle)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 47 aatgcaatgcacctgggcaaggattc 72
|||||||| |||||||||||||||||
Sbjct: 50 aatgcaatccacctgggcaaggattc 75
>RF01903;mir-500;ABRQ01341134.1/4896-4985 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgctccccctctctaatccttg 22
||||||||||||||||||||||
Sbjct: 5 tgctccccctctctaatccttg 26
