miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00753;mir-503;AANU01115741.1/19317-19387 9544:Macaca mulatta
(rhesus monkey)
Length = 71
Score = 109 bits (55), Expect = 5e-24
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgatcggtgctctggggtattgtttccg 60
|||||||||||||||||||||||||||||||| |||| || |||||| ||||||||||||
Sbjct: 1 tgccctagcagcgggaacagttctgcagtgagtgatcagtactctggagtattgtttccg 60
Query: 61 ctgccagggta 71
|||||||||||
Sbjct: 61 ctgccagggta 71
>RF00753;mir-503;AAEX02004019.1/2977-3047 9615:Canis lupus
familiaris (dog)
Length = 71
Score = 81.8 bits (41), Expect = 1e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgatcggtgctctggggtattgtttccg 60
||||||||||||||||||||| |||||||| || ||||||| ||||| |||||||||| |
Sbjct: 1 tgccctagcagcgggaacagtactgcagtgggcaatcggtgttctggagtattgtttctg 60
Query: 61 ctgcc 65
|||||
Sbjct: 61 ctgcc 65
>RF00753;mir-503;AAKN02053360.1/159109-159039 10141:Cavia
porcellus (domestic guinea pig)
Length = 71
Score = 81.8 bits (41), Expect = 1e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgatcggtgctctggggtattgtttccg 60
||||||||||||||||||||| |||||||||| ||| ||||||||| || ||||||| |
Sbjct: 1 tgccctagcagcgggaacagtactgcagtgagggatttgtgctctggagtgttgtttctg 60
Query: 61 ctgccaggg 69
|||||||||
Sbjct: 61 ctgccaggg 69
>RF00753;mir-503;BX649621.5/161937-161867 10090:Mus musculus
(house mouse)
Length = 71
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgatcggtgctctggggtattgtttccg 60
||||||||||||||||||||| |||||||||| | | ||||| |||| |||||||||||
Sbjct: 1 tgccctagcagcgggaacagtactgcagtgagtgtttggtgccctggagtattgtttcca 60
Query: 61 ctgccagggta 71
||||| |||||
Sbjct: 61 ctgcctgggta 71
>RF00753;mir-503;AANN01675780.1/1012-1082 9365:Erinaceus europaeus
(western European hedgehog)
Length = 71
Score = 67.9 bits (34), Expect = 2e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgatcggtgctctggggtattgtttc 58
||||||||||||||||||||| ||||||| ||||||| | ||||||| ||| ||||||
Sbjct: 1 tgccctagcagcgggaacagtactgcagtaagcgatcagggctctggagtaatgtttc 58
>RF00753;mir-503;AAGV020284257.1/2168-2098 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 71
Score = 65.9 bits (33), Expect = 6e-11
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgatcggtgctctggggtattgtttccg 60
||||||||||||||||||||| |||||| | ||| ||||||||||||||||||| | |
Sbjct: 1 tgccctagcagcgggaacagtactgcagcaggtgattggtgctctggggtattgttcctg 60
Query: 61 ctgcc 65
|||||
Sbjct: 61 ctgcc 65
>RF00753;mir-503;AAGU02249221.1/641-573 9785:Loxodonta africana
(African savanna elephant)
Length = 69
Score = 60.0 bits (30), Expect = 4e-09
Identities = 57/65 (87%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgatcggtgctctggggtattgtttccg 60
||||||||||||||||||||| |||||| | ||| ||| ||||||| |||||||| |||
Sbjct: 1 tgccctagcagcgggaacagtactgcagcgggcgctcg--gctctggagtattgttgccg 58
Query: 61 ctgcc 65
|||||
Sbjct: 59 ctgcc 63
>RF00753;mir-503;AAGW01455164.1/90-19 9986:Oryctolagus cuniculus
(rabbit)
Length = 72
Score = 58.0 bits (29), Expect = 1e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagc 33
||||||||||||||||||||| |||||||||||
Sbjct: 1 tgccctagcagcgggaacagtactgcagtgagc 33
>RF00753;mir-503;AAIY01107643.1/326-392 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 67
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtga 31
||||||||||||||||||||| |||||||||
Sbjct: 1 tgccctagcagcgggaacagtactgcagtga 31
>RF00753;mir-503;ABRQ01123748.1/1011-942 9813:Procavia capensis
(cape rock hyrax)
Length = 70
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagt 21
|||||||||||||||||||||
Sbjct: 1 tgccctagcagcgggaacagt 21
