miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00689;MIR390;ABIM01002245.1/567-665 3649:Carica papaya (papaya)
Length = 99
Score = 196 bits (99), Expect = 4e-50
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 8 gagaagaatctgttaagctcaggagggatagcgccatggcgggtcttgaatcttgatctt 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagaagaatctgttaagctcaggagggatagcgccatggcgggtcttgaatcttgatctt 60
Query: 68 catttgcgctatccatcctgagtttcactgcttcttctt 106
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 catttgcgctatccatcctgagtttcactgcttcttctt 99
>RF00689;MIR390;AC235430.1/64014-64117 3847:Glycine max (soybean)
Length = 104
Score = 75.8 bits (38), Expect = 1e-13
Identities = 77/90 (85%), Gaps = 5/90 (5%)
Strand = Plus / Plus
Query: 10 gaagaatctgttaagctcaggagggatagcgccatgg-----cgggtcttgaatcttgat 64
||||||||||| ||||||||||||||||||||||||| | |||| | |||||||
Sbjct: 3 gaagaatctgtaaagctcaggagggatagcgccatggatgatcttctcttcactcttgat 62
Query: 65 cttcatttgcgctatccatcctgagtttca 94
|||| ||||||||||||||||||||||||
Sbjct: 63 cttctcttgcgctatccatcctgagtttca 92
>RF00689;MIR390;FM163955.1/147-245 3702:Arabidopsis thaliana
(thale cress)
Length = 99
Score = 67.9 bits (34), Expect = 3e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 8 gagaagaatctgttaagctcaggagggatagcgccatg 45
||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gagaagaatctgtaaagctcaggagggatagcgccatg 38
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 gcgctatccatcctgagtttca 94
||||||||||||||||||||||
Sbjct: 66 gcgctatccatcctgagtttca 87
>RF00689;MIR390;AARH01000472.1/96655-96783 3694:Populus
trichocarpa
Length = 129
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 12 agaatctgttaagctcaggagggatagcgccatg 45
||||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgccatg 38
>RF00689;MIR390;AC143338.29/35527-35410 3880:Medicago truncatula
(barrel medic)
Length = 118
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 11 aagaatctgttaagctcaggagggatagcgccat 44
||||||||||||||||||||||||||||||||||
Sbjct: 4 aagaatctgttaagctcaggagggatagcgccat 37
Score = 58.0 bits (29), Expect = 3e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 60 ttgatcttcatttgcgctatccatcctgagtttcactgcttcttc 104
||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 72 ttgatcttctcttgcgctatccatcctgagtttcatggcttcttc 116
>RF00689;MIR390;CAAP02001430.1/46926-46781 29760:Vitis vinifera
Length = 146
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 12 agaatctgttaagctcaggagggatagcgccatg 45
||||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgccatg 38
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 73 gcgctatccatcctgagtttcactgcttcttctt 106
|||||||| |||||||||||||| | ||||||||
Sbjct: 113 gcgctatctatcctgagtttcacgggttcttctt 146
>RF00689;MIR390;ABIM01001395.1/10315-10183 3649:Carica papaya
(papaya)
Length = 133
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 9 agaagaatctgttaagctcaggagggatagcgccatg 45
|||||||||||| ||||||||||||||||||||||||
Sbjct: 2 agaagaatctgtaaagctcaggagggatagcgccatg 38
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 73 gcgctatccatcctgagtttcactgcttcttctt 106
|||||||| |||||||||||||| | ||||||||
Sbjct: 100 gcgctatctatcctgagtttcacgggttcttctt 133
>RF00689;MIR390;AC189543.2/98818-98914 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 8 gagaagaatctgttaagctcaggagggatagcgccat 44
||||||||||||| |||||||||||||||||||||||
Sbjct: 1 gagaagaatctgtaaagctcaggagggatagcgccat 37
>RF00689;MIR390;AARH01006918.1/30613-30728 3694:Populus
trichocarpa
Length = 116
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 10 gaagaatctgttaagctcaggagggatagcgcc 42
|||||||||||||||||||||||||||||||||
Sbjct: 3 gaagaatctgttaagctcaggagggatagcgcc 35
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 73 gcgctatccatcctgagtttcactgcttcttctt 106
|||||||||||||||||||| |||| ||||||||
Sbjct: 83 gcgctatccatcctgagttttactggttcttctt 116
>RF00689;MIR390;AM442301.1/4341-4465 29760:Vitis vinifera
Length = 125
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 12 agaatctgttaagctcaggagggatagcgcca 43
||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgcca 36
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 71 ttgcgctatccatcctgagtttcactgcttcttctt 106
|||||||||||||||||||||||| || ||||||||
Sbjct: 90 ttgcgctatccatcctgagtttcattggttcttctt 125
>RF00689;MIR390;AARH01003823.1/151507-151375 3694:Populus
trichocarpa
Length = 133
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 15 atctgttaagctcaggagggatagcgccatg 45
|||||||||||||||||||||||||||||||
Sbjct: 8 atctgttaagctcaggagggatagcgccatg 38
>RF00689;MIR390;AASG02008232.1/8506-8369 3988:Ricinus communis
(castor bean)
Length = 138
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 10 gaagaatctgttaagctcaggagggatagcgccatgg 46
||||||||| ||||||||||||||||||||||||||
Sbjct: 3 gaagaatctaataagctcaggagggatagcgccatgg 39
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 73 gcgctatccatcctgagtttcactgcttcttctt 106
|||||||||||||||||||||| || ||||||||
Sbjct: 105 gcgctatccatcctgagtttcattggttcttctt 138
>RF00689;MIR390;AASG02000259.1/53979-54102 3988:Ricinus communis
(castor bean)
Length = 124
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 tctgttaagctcaggagggatagcgcc 42
|||||||||||||||||||||||||||
Sbjct: 9 tctgttaagctcaggagggatagcgcc 35
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 73 gcgctatccatcctgagtttcactgcttcttctt 106
||||||||||||||||||||||| | ||||||||
Sbjct: 91 gcgctatccatcctgagtttcacaggttcttctt 124
>RF00689;MIR390;AC189355.2/75830-75939 51351:Brassica rapa subsp.
pekinensis
Length = 110
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 8 gagaagaatctgttaagctcaggagggatagcgccatg 45
|||||| | |||| ||||||||||||||||||||||||
Sbjct: 1 gagaagtagctgtaaagctcaggagggatagcgccatg 38
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 73 gcgctatccatcctgagtttcactgcttcttctt 106
||||||||||||||||||| || ||||||||||
Sbjct: 77 gcgctatccatcctgagttccatggcttcttctt 110
>RF00689;MIR390;AB025632.1/22985-23104 3702:Arabidopsis thaliana
(thale cress)
Length = 120
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 22 aagctcaggagggatagcgccatggc 47
||||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatggc 40
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 73 gcgctatccatcctgagtttcactgcttcttctt 106
||||||||||||||||||| || ||||||||||
Sbjct: 87 gcgctatccatcctgagttccatagcttcttctt 120
