miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00842;MIR403;ABIM01005602.1/13538-13393 3649:Carica papaya
(papaya)
Length = 146
Score = 248 bits (125), Expect = 2e-65
Identities = 139/146 (95%)
Strand = Plus / Plus
Query: 23 gcatatttcaagtttgtgcgcgaatctaatccnnnnnnnctcatcactgaaacaggcttc 82
|||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 gcatatttcaagtttgtgcgcgaatctaatccaaaaaaactcatcactgaaacaggcttc 60
Query: 83 ttgccgttcccctttgatttactaatcaaatgcactgcttcatggcgggtgtgtgctaga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgccgttcccctttgatttactaatcaaatgcactgcttcatggcgggtgtgtgctaga 120
Query: 143 ttcacgcacaaactcgtaatctgtct 168
||||||||||||||||||||||||||
Sbjct: 121 ttcacgcacaaactcgtaatctgtct 146
>RF00842;MIR403;AC189416.2/88220-88122 51351:Brassica rapa subsp.
pekinensis
Length = 99
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 139 tagattcacgcacaaactcgtaatctgtct 168
||||||||||||||||||||||||||||||
Sbjct: 70 tagattcacgcacaaactcgtaatctgtct 99
>RF00842;MIR403;EU549672.1/167-284 3702:Arabidopsis thaliana (thale
cress)
Length = 118
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 139 tagattcacgcacaaactcgtaatctgtct 168
||||||||||||||||||||||||||||||
Sbjct: 89 tagattcacgcacaaactcgtaatctgtct 118
>RF00842;MIR403;AARH01001226.1/54332-54202 3694:Populus trichocarpa
Length = 131
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 139 tagattcacgcacaaactcgtaatctgtct 168
||||||||||||||||||||||||||||||
Sbjct: 102 tagattcacgcacaaactcgtaatctgtct 131
>RF00842;MIR403;CAAP02000653.1/14609-14502 29760:Vitis vinifera
Length = 108
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 139 tagattcacgcacaaactcgtaatctgtct 168
||||||||||||||||||||||||||||||
Sbjct: 79 tagattcacgcacaaactcgtaatctgtct 108
>RF00842;MIR403;AASG02004953.1/3036-2929 3988:Ricinus communis
(castor bean)
Length = 108
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 139 tagattcacgcacaaactcgtaatctgtct 168
||||||||||||||||||||| ||||||||
Sbjct: 79 tagattcacgcacaaactcgtgatctgtct 108
>RF00842;MIR403;AARH01004350.1/142675-142577 3694:Populus
trichocarpa
Length = 99
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 139 tagattcacgcacaaactcgtaatctgtct 168
|||||||||||||||||||| ||||||||
Sbjct: 70 tagattcacgcacaaactcgcgatctgtct 99
>RF00842;MIR403;AASG02008767.1/6368-6472 3988:Ricinus communis
(castor bean)
Length = 105
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 139 tagattcacgcacaaactcgtaatct 164
||||||||||||||||||||| ||||
Sbjct: 76 tagattcacgcacaaactcgtgatct 101
>RF00842;MIR403;CAAP02000014.1/37272-37187 29760:Vitis vinifera
Length = 86
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 139 tagattcacgcacaaactcgtaatctgtct 168
|||||||||||||||||||| ||||||||
Sbjct: 57 tagattcacgcacaaactcgggatctgtct 86
>RF00842;MIR403;CAAP02002017.1/13776-13691 29760:Vitis vinifera
Length = 86
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 139 tagattcacgcacaaactcgtaatctgtct 168
|||||||||||||||||||| ||||||||
Sbjct: 57 tagattcacgcacaaactcgggatctgtct 86
