miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AASG02007435.1/277-442 3988:Ricinus communis (castor
bean)
Length = 166
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 110 tttttggggttcaataaagctgtgggaagatac 142
|||||| ||||||||||||||||||||||||||
Sbjct: 129 tttttgcggttcaataaagctgtgggaagatac 161
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 20 tttgtacttttccacagctttcttgaactgcat 52
|||||| | ||||||||||||||||||||||||
Sbjct: 2 tttgtattcttccacagctttcttgaactgcat 34
>RF00648;MIR396;AC153121.15/56895-56790 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 111 ttttggggttcaataaagctgtgggaagataca 143
||||| |||||||||||||||||||||||||||
Sbjct: 70 ttttgcggttcaataaagctgtgggaagataca 102
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 20 tttgtacttttccacagctttcttgaactgcat 52
|||||| | ||||||||||||||||||||||||
Sbjct: 2 tttgtattcttccacagctttcttgaactgcat 34
>RF00648;MIR396;AC006250.4/85478-85629 3702:Arabidopsis thaliana
(thale cress)
Length = 152
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 112 tttggggttcaataaagctgtgggaagataca 143
|||| |||||||||||||||||||||||||||
Sbjct: 117 tttgcggttcaataaagctgtgggaagataca 148
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgca 51
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
>RF00648;MIR396;ABIM01011222.1/24137-24037 3649:Carica papaya
(papaya)
Length = 101
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 117 ggttcaataaagctgtgggaagataca 143
|||||||||||||||||||||||||||
Sbjct: 71 ggttcaataaagctgtgggaagataca 97
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 20 tttgtacttttccacagctttcttgaactgcat 52
|||||| | ||||||||||||||||||||||||
Sbjct: 2 tttgtattcttccacagctttcttgaactgcat 34
>RF00648;MIR396;AARH01002977.1/26105-26230 3694:Populus trichocarpa
Length = 126
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 117 ggttcaataaagctgtgggaagataca 143
|||||||||||||||||||||||||||
Sbjct: 96 ggttcaataaagctgtgggaagataca 122
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgca 51
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
>RF00648;MIR396;AARH01007577.1/181152-181286 3694:Populus
trichocarpa
Length = 135
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 117 ggttcaataaagctgtgggaagataca 143
|||||||||||||||||||||||||||
Sbjct: 105 ggttcaataaagctgtgggaagataca 131
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 tttgtacttttccacagctttcttgaactgca 51
|||||| | |||||||||||||||||||||||
Sbjct: 2 tttgtattcttccacagctttcttgaactgca 33
>RF00648;MIR396;AP010531.1/68027-68126 34305:Lotus japonicus
Length = 100
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 111 ttttggggttcaataaagctgtgggaagata 141
||||| |||||||||||||||||||||||||
Sbjct: 64 ttttgcggttcaataaagctgtgggaagata 94
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 20 tttgtacttttccacagctttcttgaactgcat 52
|||||| | ||||||||||||||||||||||||
Sbjct: 2 tttgtattcttccacagctttcttgaactgcat 34
>RF00648;MIR396;AM489352.2/7330-7448 29760:Vitis vinifera
Length = 119
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 117 ggttcaataaagctgtgggaagatac 142
||||||||||||||||||||||||||
Sbjct: 89 ggttcaataaagctgtgggaagatac 114
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 20 tttgtacttttccacagctttcttgaactgcat 52
|||||| | ||||||||||||||||||||||||
Sbjct: 2 tttgtattcttccacagctttcttgaactgcat 34
>RF00648;MIR396;FM164183.1/100-235 3702:Arabidopsis thaliana
(thale cress)
Length = 136
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 tacttttccacagctttcttgaact 48
|||||||||||||||||||||||||
Sbjct: 6 tacttttccacagctttcttgaact 30
>RF00648;MIR396;FJ085642.1/369-262 3352:Pinus taeda (loblolly
pine)
Length = 108
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 tacttttccacagctttcttgaact 48
|||||||||||||||||||||||||
Sbjct: 6 tacttttccacagctttcttgaact 30
>RF00648;MIR396;EU941272.1/182-300 4577:Zea mays
Length = 119
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgcat 52
||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcat 34
>RF00648;MIR396;ABXC01006376.1/116039-116148 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgcat 52
||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcat 34
>RF00648;MIR396;ABXC01002982.1/44228-44122 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgcat 52
||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcat 34
>RF00648;MIR396;AAAA02018332.1/10514-10398 39946:Oryza sativa
Indica Group
Length = 117
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgcat 52
||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcat 34
>RF00648;MIR396;AARH01007577.1/188194-188047 3694:Populus
trichocarpa
Length = 148
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 cttttccacagctttcttgaact 48
|||||||||||||||||||||||
Sbjct: 8 cttttccacagctttcttgaact 30
>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus
trichocarpa
Length = 157
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 cttttccacagctttcttgaact 48
|||||||||||||||||||||||
Sbjct: 8 cttttccacagctttcttgaact 30
>RF00648;MIR396;AASG02001279.1/18109-18241 3988:Ricinus communis
(castor bean)
Length = 133
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 cttttccacagctttcttgaact 48
|||||||||||||||||||||||
Sbjct: 8 cttttccacagctttcttgaact 30
>RF00648;MIR396;AC153121.15/48150-48253 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 cttttccacagctttcttgaact 48
|||||||||||||||||||||||
Sbjct: 8 cttttccacagctttcttgaact 30
>RF00648;MIR396;AP010531.1/73143-73036 34305:Lotus japonicus
Length = 108
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 cttttccacagctttcttgaact 48
|||||||||||||||||||||||
Sbjct: 8 cttttccacagctttcttgaact 30
>RF00648;MIR396;CAAP02000554.1/84783-84895 29760:Vitis vinifera
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 cttttccacagctttcttgaact 48
|||||||||||||||||||||||
Sbjct: 8 cttttccacagctttcttgaact 30
>RF00648;MIR396;AM489352.2/13768-13664 29760:Vitis vinifera
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 cttttccacagctttcttgaact 48
|||||||||||||||||||||||
Sbjct: 8 cttttccacagctttcttgaact 30
>RF00648;MIR396;AP005056.2/134150-134304 39947:Oryza sativa
Japonica Group
Length = 155
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgca 51
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
>RF00648;MIR396;ABIM01011222.1/17767-17925 3649:Carica papaya
(papaya)
Length = 159
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 ttttccacagctttcttgaact 48
||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaact 30
>RF00648;MIR396;AARH01001850.1/327743-327639 3694:Populus
trichocarpa
Length = 105
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 27 ttttccacagctttcttgaact 48
||||||||||||||||||||||
Sbjct: 96 ttttccacagctttcttgaact 75
>RF00648;MIR396;AASG02002614.1/17574-17698 3988:Ricinus communis
(castor bean)
Length = 125
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgcataa 54
||||||||||||||||||||| ||||
Sbjct: 11 ttccacagctttcttgaactgaataa 36
>RF00648;MIR396;AC209588.1/2779-2519 4081:Solanum lycopersicum
Length = 261
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 ttttccacagctttcttgaact 48
||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaact 30
>RF00648;MIR396;AC226039.1/69968-70054 4641:Musa acuminata
Length = 87
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 ttttccacagctttcttgaact 48
||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaact 30
