miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01015;mir-885;AAGU02189671.1/3897-3824 9785:Loxodonta africana
(African savanna elephant)
Length = 74
Score = 139 bits (70), Expect = 5e-33
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 1 ccgcactctctccattacactaccctgcctcttctccatgagaggcagcggggtgtagtg 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 ccgcactctctccattacactaccctgcctcttctccacgagaggcagcggggtgtagtg 60
Query: 61 gatagagcacgggt 74
||||||||||||||
Sbjct: 61 gatagagcacgggt 74
>RF01015;mir-885;ABRP01134916.1/8454-8527 132908:Pteropus vampyrus
(large flying fox)
Length = 74
Score = 97.6 bits (49), Expect = 2e-20
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 6 ctctctccattacactaccctgcctcttctccatgagaggcagcggggtgtagtggatag 65
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 6 ctctctccattacactaccctgcctcttctctgtgagaggcagtggggtgtagtggagag 65
Query: 66 agcacgggt 74
|||| ||||
Sbjct: 66 agcatgggt 74
>RF01015;mir-885;AAQR01546943.1/4149-4219 30611:Otolemur garnettii
(small-eared galago)
Length = 71
Score = 65.9 bits (33), Expect = 6e-11
Identities = 54/57 (94%), Gaps = 3/57 (5%)
Strand = Plus / Plus
Query: 13 cattacactaccctgcctcttctccatgagaggca-gcggggtgtagtggatagagc 68
|||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 11 cattacactacc-tgcctcttctc-atgagaggcaagcggggtgtagtggatagagc 65
>RF01015;mir-885;AAKN02049207.1/166389-166462 10141:Cavia
porcellus (domestic guinea pig)
Length = 74
Score = 63.9 bits (32), Expect = 3e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 3 gcactctctccattacactaccctgcctcttctccatgagaggcagcggggtgtagtgga 62
|||||||||||| |||| | || ||||||||||||| || ||||||| |||| |||||||
Sbjct: 3 gcactctctccactacaatgccttgcctcttctccaggaaaggcagcagggtatagtgga 62
Query: 63 tagagcac 70
|||||||
Sbjct: 63 cagagcac 70
>RF01015;mir-885;AAPN01127066.1/5962-6036 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 46.1 bits (23), Expect = 6e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 36 ccatgagaggcagcggggtgtagtggatagagcac 70
|||||||| |||| | |||||||||||||||||||
Sbjct: 37 ccatgagaagcagtgtggtgtagtggatagagcac 71
