miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAGU02890008.1/479-557 9785:Loxodonta africana
(African savanna elephant)
Length = 79
Score = 147 bits (74), Expect = 2e-35
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 1 gtgcttaaagaatggctgtccgtagtatggtctctatatttatgatgattaatatcggac 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2 gtgcttaaagaatggctgtccgtactatggtctctatatttatgatgattaatatcggac 61
Query: 61 aaccattgttttagtatc 78
||||||||||||||||||
Sbjct: 62 aaccattgttttagtatc 79
>RF00641;mir-154;AAPY01359967.1/409-487 37347:Tupaia belangeri
(northern tree shrew)
Length = 79
Score = 105 bits (53), Expect = 8e-23
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 1 gtgcttaaagaatggctgtccgtagtatggtctctatatttatgatgattaatatcggac 60
|||||||||||||||||||| |||| |||||||||||||| |||||| ||||||||||||
Sbjct: 2 gtgcttaaagaatggctgtctgtagaatggtctctatattcatgatggttaatatcggac 61
Query: 61 aaccattgttttagtat 77
| || ||||||||||||
Sbjct: 62 agccgttgttttagtat 78
>RF00641;mir-154;ABRO01197048.1/2844-2922 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 79
Score = 99.6 bits (50), Expect = 5e-21
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 1 gtgcttaaagaatggctgtccgtagtatggtctctatatttatgatgattaatatcggac 60
|||| |||||||||| |||||| || |||||||||||||||||| ||||||||||||||
Sbjct: 2 gtgcctaaagaatggttgtccgaggtgtggtctctatatttatgacgattaatatcggac 61
Query: 61 aaccattgttttagtatc 78
|||||||| |||||||||
Sbjct: 62 aaccattgctttagtatc 79
>RF00641;mir-154;AAYZ01254085.1/546-624 9978:Ochotona princeps
(American pika)
Length = 79
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 4 cttaaagaatggctgtccgtagtatggtctctatatttatgatgattaatatcggacaac 63
|||||||||||||||||||| ||||||||||| || | | || |||||||||||||||||
Sbjct: 5 cttaaagaatggctgtccgtggtatggtctctgtaatcaggaggattaatatcggacaac 64
Query: 64 cattgttt 71
||||||||
Sbjct: 65 cattgttt 72
>RF00641;mir-154;AAQR01332678.1/6623-6702 30611:Otolemur garnettii
(small-eared galago)
Length = 80
Score = 79.8 bits (40), Expect = 5e-15
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 11 aatggctgtccgtagtatggtctctatatttatgatgattaatatcggacaaccattgtt 70
|||||||||| |||||||| |||||| ||| |||||||||||| ||||||||||||||
Sbjct: 13 aatggctgtctgtagtatgatctctaatattaagatgattaatattggacaaccattgtt 72
Query: 71 ttagtatc 78
||||||||
Sbjct: 73 ttagtatc 80
