miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctctaaataagtgtc 38
||||||||||||||| |||||||||||
Sbjct: 5 tactccctccgtctcaaaataagtgtc 31
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctctaaataagtgtc 38
||||||||||||||| |||||||||||
Sbjct: 5 tactccctccgtctcaaaataagtgtc 31
>RF01058;MIR806;AAAA02018790.1/13665-13421 39946:Oryza sativa Indica
Group
Length = 245
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 tactccctccgtctctaaataa 33
||||||||||||||||||||||
Sbjct: 244 tactccctccgtctctaaataa 223
>RF01058;MIR806;AC090873.4/88023-88262 4530:Oryza sativa (rice)
Length = 240
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 ctactccctccgtctctaaata 32
||||||||||||||||||||||
Sbjct: 240 ctactccctccgtctctaaata 219
>RF01058;MIR806;AACV01006779.1/10575-10331 39947:Oryza sativa
Japonica Group
Length = 245
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 ctactccctccgtctctaaata 32
||||||||||||||||||||||
Sbjct: 245 ctactccctccgtctctaaata 224
>RF01058;MIR806;AP008213.1/20597148-20596906 39947:Oryza sativa
Japonica Group
Length = 243
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ctactccctccgtctctaaata 32
||||||||||||||||||||||
Sbjct: 1 ctactccctccgtctctaaata 22
>RF01058;MIR806;AP008212.1/12448638-12448397 39947:Oryza sativa
Japonica Group
Length = 242
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ctactccctccgtctctaaata 32
||||||||||||||||||||||
Sbjct: 1 ctactccctccgtctctaaata 22
>RF00906;MIR1122;AC144738.2/99574-99421 39947:Oryza sativa Japonica
Group
Length = 154
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 ctactccctccgtctctaaata 32
||||||||||||||||||||||
Sbjct: 151 ctactccctccgtctctaaata 130
>RF00906;MIR1122;AAAA02026694.1/72816-72971 39946:Oryza sativa
Indica Group
Length = 156
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ctactccctccgtctctaaata 32
||||||||||||||||||||||
Sbjct: 4 ctactccctccgtctctaaata 25
>RF00906;MIR1122;AACV01003934.1/29289-29133 39947:Oryza sativa
Japonica Group
Length = 157
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 ctactccctccgtctctaaata 32
||||||||||||||||||||||
Sbjct: 154 ctactccctccgtctctaaata 133
>RF01058;MIR806;AAAA02020393.1/7201-6948 39946:Oryza sativa Indica
Group
Length = 254
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tactccctccgtctctaaata 32
|||||||||||||||||||||
Sbjct: 2 tactccctccgtctctaaata 22
>RF01058;MIR806;AAAA02005027.1/2202-2417 39946:Oryza sativa Indica
Group
Length = 216
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 12 tactccctccgtctctaaata 32
|||||||||||||||||||||
Sbjct: 215 tactccctccgtctctaaata 195
>RF01058;MIR806;AAAA02021705.1/4510-4743 39946:Oryza sativa Indica
Group
Length = 234
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tactccctccgtctctaaata 32
|||||||||||||||||||||
Sbjct: 2 tactccctccgtctctaaata 22
>RF01058;MIR806;AAAA02003707.1/4750-4491 39946:Oryza sativa Indica
Group
Length = 260
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tactccctccgtctctaaata 32
|||||||||||||||||||||
Sbjct: 2 tactccctccgtctctaaata 22
>RF01058;MIR806;AP003339.4/3454-3658 39947:Oryza sativa Japonica
Group
Length = 205
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 12 tactccctccgtctctaaata 32
|||||||||||||||||||||
Sbjct: 204 tactccctccgtctctaaata 184
>RF01058;MIR806;AP003911.3/90546-90311 39947:Oryza sativa Japonica
Group
Length = 236
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 12 tactccctccgtctctaaata 32
|||||||||||||||||||||
Sbjct: 235 tactccctccgtctctaaata 215
>RF01058;MIR806;AP008217.1/22458494-22458255 39947:Oryza sativa
Japonica Group
Length = 240
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tactccctccgtctctaaata 32
|||||||||||||||||||||
Sbjct: 2 tactccctccgtctctaaata 22
>RF01058;MIR806;AAAA02015636.1/16690-16445 39946:Oryza sativa Indica
Group
Length = 246
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 12 tactccctccgtctctaaata 32
|||||||||||||||||||||
Sbjct: 245 tactccctccgtctctaaata 225
>RF01058;MIR806;AACV01022282.1/53543-53781 39947:Oryza sativa
Japonica Group
Length = 239
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tactccctccgtctctaaata 32
|||||||||||||||||||||
Sbjct: 2 tactccctccgtctctaaata 22
>RF01058;MIR806;AACV01016773.1/2362-2603 39947:Oryza sativa Japonica
Group
Length = 242
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 12 tactccctccgtctctaaata 32
|||||||||||||||||||||
Sbjct: 241 tactccctccgtctctaaata 221
>RF01058;MIR806;AC136971.3/14967-14725 39947:Oryza sativa Japonica
Group
Length = 243
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tactccctccgtctctaaata 32
|||||||||||||||||||||
Sbjct: 2 tactccctccgtctctaaata 22
>RF01058;MIR806;AAAA02000952.1/328-90 39946:Oryza sativa Indica
Group
Length = 239
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tactccctccgtctctaaata 32
|||||||||||||||||||||
Sbjct: 2 tactccctccgtctctaaata 22
>RF01058;MIR806;AAAA02021999.1/7185-7427 39946:Oryza sativa Indica
Group
Length = 243
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tactccctccgtctctaaata 32
|||||||||||||||||||||
Sbjct: 2 tactccctccgtctctaaata 22
>RF01058;MIR806;AP003917.3/19568-19329 39947:Oryza sativa Japonica
Group
Length = 240
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 12 tactccctccgtctctaaata 32
|||||||||||||||||||||
Sbjct: 239 tactccctccgtctctaaata 219
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 11 ctactccctccgtctctaaataagt 35
|||||||||||||||| ||||||||
Sbjct: 102 ctactccctccgtctcaaaataagt 78
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 11 ctactccctccgtctctaaataagt 35
|||||||||||||||| ||||||||
Sbjct: 102 ctactccctccgtctcaaaataagt 78
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 42.1 bits (21), Expect = 9e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 11 ctactccctccgtctctaaataagtgtcg 39
|||||||||||||| | ||||||||||||
Sbjct: 4 ctactccctccgtcccaaaataagtgtcg 32
>RF00906;MIR1122;AAAA02031042.1/16213-16344 39946:Oryza sativa
Indica Group
Length = 132
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 12 tactccctccgtctctaaata 32
|||||||||||||||||||||
Sbjct: 128 tactccctccgtctctaaata 108
>RF00906;MIR1122;AP002839.1/45591-45479 39947:Oryza sativa Japonica
Group
Length = 113
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 12 tactccctccgtctctaaata 32
|||||||||||||||||||||
Sbjct: 109 tactccctccgtctctaaata 89
>RF00906;MIR1122;AACV01024343.1/13819-13664 39947:Oryza sativa
Japonica Group
Length = 156
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tactccctccgtctctaaata 32
|||||||||||||||||||||
Sbjct: 5 tactccctccgtctctaaata 25
>RF00906;MIR1122;AP008208.1/20080058-20080152 39947:Oryza sativa
Japonica Group
Length = 95
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 12 tactccctccgtctctaaata 32
|||||||||||||||||||||
Sbjct: 91 tactccctccgtctctaaata 71
>RF00906;MIR1122;AL606618.4/52399-52286 39947:Oryza sativa Japonica
Group
Length = 114
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 12 tactccctccgtctctaaata 32
|||||||||||||||||||||
Sbjct: 110 tactccctccgtctctaaata 90
