miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01006238.1/21919-22080 4558:Sorghum bicolor
(sorghum)
Length = 162
Score = 58.0 bits (29), Expect = 4e-08
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 10 tgatactccctccgttccaaattataggtcgttttaatttttctagattcatg 62
||||||||||||| |||||||||||| | |||||| |||||||||||||||
Sbjct: 161 tgatactccctccattccaaattataagacgttttgggttttctagattcatg 109
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 126 aagccaaaacgacctataatttggaacggaggtagtac 163
||||||||||| | |||||| ||||||||||| |||||
Sbjct: 41 aagccaaaacgtcttataatgtggaacggagggagtac 4
>RF00906;MIR1122;ABXC01003678.1/89613-89769 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattataggtcgtttt 44
||||||||||||||||||||||| ||||||||
Sbjct: 5 tactccctccgttccaaattataagtcgtttt 36
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 130 caaaacgacctataatttggaacggaggtagtac 163
||||||||| |||||||||||||||||| |||||
Sbjct: 37 caaaacgacttataatttggaacggagggagtac 4
>RF00906;MIR1122;ABXC01006180.1/72632-72485 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 54.0 bits (27), Expect = 7e-07
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattataggtcgttttaatttttctagattcatgaacattatta 72
||||||||||||||||||||||| | | |||| ||||||||||| ||| | ||| ||
Sbjct: 144 tactccctccgttccaaattataagacattttggtttttctagatgcattgattttacta 85
Query: 73 tgtatctagacatag 87
||||| |||||||||
Sbjct: 84 tgtatttagacatag 70
>RF00906;MIR1122;ABXC01000087.1/99966-100106 4558:Sorghum bicolor
(sorghum)
Length = 141
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 12 atactccctccgttccaaattataggtcgtt 42
|||||||||||||||||||||||| ||||||
Sbjct: 4 atactccctccgttccaaattataagtcgtt 34
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 126 aagccaaaacgacctataatttggaacggaggtagta 162
|||||| |||||| |||||||||||||||||| ||||
Sbjct: 41 aagccagaacgacttataatttggaacggagggagta 5
>RF00906;MIR1122;AY761662.1/398-280 4558:Sorghum bicolor (sorghum)
Length = 119
Score = 54.0 bits (27), Expect = 7e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 15 ctccctccgttccaaattataggtcgttttaatttttctagat 57
|||||||| | ||||||||||||||||||| |||||||||||
Sbjct: 113 ctccctccatcccaaattataggtcgttttggtttttctagat 71
>RF00906;MIR1122;ABXC01006108.1/73971-74122 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 52.0 bits (26), Expect = 3e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 125 taagccaaaacgacctataatttggaacggaggtagta 162
|||||||||||||| || ||||||||||||||| ||||
Sbjct: 42 taagccaaaacgacttacaatttggaacggagggagta 5
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattataggtcgtttt 44
|||||||||||||||||||| || ||||||||
Sbjct: 5 tactccctccgttccaaattgtaagtcgtttt 36
>RF00906;MIR1122;ABXC01000869.1/217-331 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 52.0 bits (26), Expect = 3e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 113 ctatgaatcttataagccaaaacgacctataatttggaacggaggtagta 162
|||||||||| ||||||||||| | |||||||||||||||||| ||||
Sbjct: 62 ctatgaatctagaaagccaaaacgtcttataatttggaacggagggagta 111
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattataggtcgtttt 44
||||||||||||||||||||||| | ||||||
Sbjct: 111 tactccctccgttccaaattataagacgtttt 80
>RF00906;MIR1122;ABXC01002751.1/4300-4149 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 gatactccctccgttccaaattataggtcg 40
||||||||||||||||||||||||| ||||
Sbjct: 3 gatactccctccgttccaaattataagtcg 32
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattata 35
|||||||||||||||||||||||
Sbjct: 148 tactccctccgttccaaattata 126
>RF00906;MIR1122;ABXC01003117.1/17769-17632 4558:Sorghum bicolor
(sorghum)
Length = 138
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 12 atactccctccgttccaaattataggtcg 40
|||||||||||||||||||||||| ||||
Sbjct: 4 atactccctccgttccaaattataagtcg 32
>RF00906;MIR1122;ABXC01004300.1/32074-32218 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 50.1 bits (25), Expect = 1e-05
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattataggtcgttttaatttttctagat 57
|||||||||||||||||||| || |||||| || || ||||||||
Sbjct: 5 tactccctccgttccaaattgtaagtcgttctagttattctagat 49
>RF00906;MIR1122;ABXC01000415.1/124553-124445 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 127 agccaaaacgacctataatttggaacggaggtagta 162
|||||||||| | |||||||||||||||||| ||||
Sbjct: 70 agccaaaacgtcttataatttggaacggagggagta 105
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattataggtcgtttt 44
||||||||||||||||||||||| | ||||||
Sbjct: 105 tactccctccgttccaaattataagacgtttt 74
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 126 aagccaaaacgacctataatttggaacggag 156
||||||||||| | |||||||||||||||||
Sbjct: 41 aagccaaaacgtcttataatttggaacggag 11
>RF00906;MIR1122;ABXC01006544.1/387099-387256 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattataggtcg 40
||||||||||||||||||||||| ||||
Sbjct: 154 tactccctccgttccaaattataagtcg 127
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 130 caaaacgacctataatttggaacggaggtagtaca 164
|||| |||| |||||||||||||||||| ||||||
Sbjct: 122 caaagcgacttataatttggaacggagggagtaca 156
>RF00906;MIR1122;ABXC01001510.1/32715-32871 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 48.1 bits (24), Expect = 4e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 126 aagccaaaacgacctataatttggaacggaggtagtacaa 165
||||||||||| | |||| ||||||||||||| |||||||
Sbjct: 117 aagccaaaacgtcttatagtttggaacggagggagtacaa 156
>RF00906;MIR1122;ABXC01000646.1/88636-88479 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattataggtcg 40
||||||||||||||||||||||| ||||
Sbjct: 154 tactccctccgttccaaattataagtcg 127
>RF00906;MIR1122;ABXC01001527.1/885-965 4558:Sorghum bicolor
(sorghum)
Length = 81
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattata 35
|||||||||||||||||||||||
Sbjct: 5 tactccctccgttccaaattata 27
>RF00906;MIR1122;ABXC01002968.1/30248-30403 4558:Sorghum bicolor
(sorghum)
Length = 156
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattata 35
|||||||||||||||||||||||
Sbjct: 5 tactccctccgttccaaattata 27
>RF00906;MIR1122;ABXC01002366.1/89795-89952 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattata 35
|||||||||||||||||||||||
Sbjct: 154 tactccctccgttccaaattata 132
>RF00906;MIR1122;AACV01000413.1/31680-31766 39947:Oryza sativa
Japonica Group
Length = 87
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 127 agccaaaacgacctataatttggaacggaggtagtacaa 165
|||||||| ||||||| ||||| |||||||||||||||
Sbjct: 48 agccaaaaatacctatattttgggacggaggtagtacaa 86
>RF00906;MIR1122;AACV01008275.1/11041-11180 39947:Oryza sativa
Japonica Group
Length = 140
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 atgatactccctccgttccaaattata 35
|||||||||||||||||||||| ||||
Sbjct: 1 atgatactccctccgttccaaaatata 27
>RF00906;MIR1122;ABXC01001787.1/79252-79126 4558:Sorghum bicolor
(sorghum)
Length = 127
Score = 44.1 bits (22), Expect = 6e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 12 atactccctccgttccaaattataggtcgttttaatttttctagat 57
|||||||||| ||||||||||||| | |||||| |||||| ||||
Sbjct: 4 atactccctctgttccaaattataagacgttttggtttttcaagat 49
>RF00906;MIR1122;ABXC01002870.1/113864-113706 4558:Sorghum bicolor
(sorghum)
Length = 159
Score = 44.1 bits (22), Expect = 6e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattataggtcgttttaatttttctagattcatg 62
||||||||| ||| ||||||||| | |||||| |||||||||||||||
Sbjct: 5 tactccctctgtttcaaattataagacgttttggcttttctagattcatg 54
>RF00906;MIR1122;ABXC01002915.1/67233-67385 4558:Sorghum bicolor
(sorghum)
Length = 153
Score = 44.1 bits (22), Expect = 6e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 12 atactccctccgttccaaattataggtcgttttaatttttctagat 57
|||||||||||| ||||||||||| | | |||| | ||||||||||
Sbjct: 4 atactccctccgctccaaattataagacattttgacttttctagat 49
>RF00906;MIR1122;EU379326.1/1838-1972 269377:Poa palustris
Length = 135
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 atactccctccgttccaaatta 33
||||||||||||||||||||||
Sbjct: 4 atactccctccgttccaaatta 25
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 atactccctccgttccaaatta 33
||||||||||||||||||||||
Sbjct: 132 atactccctccgttccaaatta 111
>RF00906;MIR1122;AAAA02034559.1/3133-3272 39946:Oryza sativa
Indica Group
Length = 140
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 gatactccctccgttccaaattatag 36
|||||||||||||||||||| |||||
Sbjct: 3 gatactccctccgttccaaaatatag 28
