miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
trichocarpa
Length = 86
Score = 95.6 bits (48), Expect = 1e-19
Identities = 76/84 (90%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 12 tgcctggctccctgtatgccattttcagagcccatcggtatttccaatggcctccgtgga 71
|||||||||||||||||||||||| ||||||||| ||| || | ||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttgcagagcccaacgg-atcctcgatggcctccgtgga 62
Query: 72 tggcgtatgaggagccaagcatat 95
||||||||||||||||| ||||||
Sbjct: 63 tggcgtatgaggagccatgcatat 86
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
Length = 86
Score = 93.7 bits (47), Expect = 4e-19
Identities = 78/87 (89%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 9 atatgcctggctccctgtatgccattttcagagcccatcggtatttccaatggcctccgt 68
||||||||||||||||||||||||||| ||||||||| ||| | | | ||||||| |||
Sbjct: 1 atatgcctggctccctgtatgccatttgcagagcccaccggcacat-cgatggccttcgt 59
Query: 69 ggatggcgtatgaggagccaagcatat 95
|||||||||||||||||||| ||||||
Sbjct: 60 ggatggcgtatgaggagccatgcatat 86
>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 81.8 bits (41), Expect = 2e-15
Identities = 77/87 (88%), Gaps = 4/87 (4%)
Strand = Plus / Plus
Query: 10 tatgcctggctccctgtatgccattttcagagcccatcg-gtatttccaatggcctccgt 68
|||||||||||||||||||||||| | | |||||||||| |||| | ||| |||||||
Sbjct: 2 tatgcctggctccctgtatgccatatgctgagcccatcgagtat---cgatgacctccgt 58
Query: 69 ggatggcgtatgaggagccaagcatat 95
|||||||||||||||||||| ||||||
Sbjct: 59 ggatggcgtatgaggagccatgcatat 85
>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
(papaya)
Length = 85
Score = 75.8 bits (38), Expect = 1e-13
Identities = 74/84 (88%), Gaps = 4/84 (4%)
Strand = Plus / Plus
Query: 12 tgcctggctccctgtatgccattttcagagcccatcg-gtatttccaatggcctccgtgg 70
|||||||||||||||||||||||| ||||||||| || | || | ||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttgcagagcccaccgagcatcgc---tggcctccgtgg 60
Query: 71 atggcgtatgaggagccaagcata 94
|||||||||||||||||| |||||
Sbjct: 61 atggcgtatgaggagccatgcata 84
>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
Length = 86
Score = 63.9 bits (32), Expect = 4e-10
Identities = 72/84 (85%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 12 tgcctggctccctgtatgccattttcagagcccatcggtatttccaatggcctccgtgga 71
|||||||||||||||||||||||| ||||| ||||| | || |||| ||| ||||
Sbjct: 4 tgcctggctccctgtatgccatttggagagctcatcgaaacatc-aatgatctctttgga 62
Query: 72 tggcgtatgaggagccaagcatat 95
||||||||||||||||||||||||
Sbjct: 63 tggcgtatgaggagccaagcatat 86
>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 67 gtggatggcgtatgaggagccaagcatat 95
|||||||||||||||||||||||||||||
Sbjct: 58 gtggatggcgtatgaggagccaagcatat 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tgcctggctccctgtatgccat 33
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccat 25
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 9 atatgcctggctccctgtatgccattt 35
|||||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgccattt 27
>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
Length = 86
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 atgcctggctccctgtatgccattt 35
|||||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgccattt 27
>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
(castor bean)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 tgcctggctccctgtatgccattt 35
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccattt 27
>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 tgcctggctccctgtatgccattt 35
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccattt 27
>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 atatgcctggctccctgtatgcca 32
||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcca 24
>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 atatgcctggctccctgtatgcca 32
||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcca 24
>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 atatgcctggctccctgtatgcca 32
||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcca 24
>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
Indica Group
Length = 136
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 atatgcctggctccctgtatgcca 32
||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcca 24
>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
(papaya)
Length = 86
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 atgcctggctccctgtatgccat 33
|||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgccat 25
>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
(papaya)
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tatgcctggctccctgtatgcca 32
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;EU548646.1/366-280 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tatgcctggctccctgtatgcca 32
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
trichocarpa
Length = 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tatgcctggctccctgtatgcca 32
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
Length = 89
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tatgcctggctccctgtatgcca 32
|||||||||||||||||||||||
Sbjct: 1 tatgcctggctccctgtatgcca 23
>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
(castor bean)
Length = 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tatgcctggctccctgtatgcca 32
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;AY551220.1/23-122 4530:Oryza sativa (rice)
Length = 100
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 atatgcctggctccctgtatgcc 31
|||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcc 23
>RF00247;mir-160;AC189245.2/87285-87372 51351:Brassica rapa subsp.
pekinensis
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 atgcctggctccctgtatgcca 32
||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcca 24
>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 atgcctggctccctgtatgcca 32
||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcca 24