miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 129 bits (65), Expect = 8e-30
Identities = 95/104 (91%), Gaps = 2/104 (1%)
Strand = Plus / Plus
Query: 4 agagagagacagggaacaagcagagcatggattgagtttttaccaaaacatcaaatgact 63
|||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||||
Sbjct: 12 agagagagacagggaacaagcagagcatggattgag--tttactaaaacattaaacgact 69
Query: 64 atgtttggtctcttcccatgcactgcctcttccctggctccctc 107
| ||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 70 cttttttgtctctacccatgcactgcctcttccctggctccctc 113
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 73 ctcttcccatgcactgcctcttccctggctc 103
|||| ||||||||||||||||||||||||||
Sbjct: 79 ctctacccatgcactgcctcttccctggctc 109
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 73 ctcttcccatgcactgcctcttccctggct 102
|||| |||||||||||||||||||||||||
Sbjct: 72 ctctacccatgcactgcctcttccctggct 101
>RF00690;MIR408;AP008207.1/12284551-12284732 39947:Oryza sativa
Japonica Group
Length = 182
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 77 tcccatgcactgcctcttccctggctccc 105
|||| ||||||||||||||||||||||||
Sbjct: 138 tcccctgcactgcctcttccctggctccc 166
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 80 catgcactgcctcttccctggctc 103
||||||||||||||||||||||||
Sbjct: 117 catgcactgcctcttccctggctc 140
>RF00690;MIR408;EU947091.1/49-229 4577:Zea mays
Length = 181
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 77 tcccatgcactgcctcttccctggctcc 104
|||| |||||||||||||||||||||||
Sbjct: 138 tcccctgcactgcctcttccctggctcc 165
>RF00690;MIR408;EU976649.1/72-263 4577:Zea mays
Length = 192
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 77 tcccatgcactgcctcttccctggctcc 104
|||| |||||||||||||||||||||||
Sbjct: 149 tcccctgcactgcctcttccctggctcc 176
>RF00690;MIR408;EU972352.1/61-243 4577:Zea mays
Length = 183
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 77 tcccatgcactgcctcttccctggctcc 104
|||| |||||||||||||||||||||||
Sbjct: 140 tcccctgcactgcctcttccctggctcc 167
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 80 catgcactgcctcttccctggct 102
|||||||||||||||||||||||
Sbjct: 83 catgcactgcctcttccctggct 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 agacagggaacaagcagagcatggat 35
|||||||||||| |||||||||||||
Sbjct: 18 agacagggaacatgcagagcatggat 43
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgcactgcctcttccctggctc 103
||||||||||||||||||||||
Sbjct: 86 tgcactgcctcttccctggctc 107
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 73 ctcttcccatgcactgcctcttccctggct 102
|||| ||| |||||||||||||||||||||
Sbjct: 73 ctctacccctgcactgcctcttccctggct 102
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 80 catgcactgcctcttccctggc 101
||||||||||||||||||||||
Sbjct: 97 catgcactgcctcttccctggc 118
