miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus trichocarpa
Length = 86
Score = 56.0 bits (28), Expect = 1e-07
Identities = 65/76 (85%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 29 tgcctggctccatgtatgacattttcagagaccatcggtatttccaatggcctccgtgaa 88
||||||||||| |||||| ||||| ||||| ||| ||| || | |||||||||||| |
Sbjct: 4 tgcctggctccctgtatgccatttgcagagcccaacgg-atcctcgatggcctccgtgga 62
Query: 89 tggcgtatgaggagcc 104
||||||||||||||||
Sbjct: 63 tggcgtatgaggagcc 78
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
Length = 86
Score = 54.0 bits (27), Expect = 5e-07
Identities = 67/79 (84%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 26 atatgcctggctccatgtatgacattttcagagaccatcggtatttccaatggcctccgt 85
|||||||||||||| |||||| ||||| ||||| ||| ||| | | | ||||||| |||
Sbjct: 1 atatgcctggctccctgtatgccatttgcagagcccaccggcacat-cgatggccttcgt 59
Query: 86 gaatggcgtatgaggagcc 104
| |||||||||||||||||
Sbjct: 60 ggatggcgtatgaggagcc 78
>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
(papaya)
Length = 85
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 76 tggcctccgtgaatggcgtatgaggagcc 104
||||||||||| |||||||||||||||||
Sbjct: 49 tggcctccgtggatggcgtatgaggagcc 77
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 85 tgaatggcgtatgaggagcctagcatat 112
|||||||||||||||||||| |||||||
Sbjct: 62 tgaatggcgtatgaggagccaagcatat 89
>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana (thale
cress)
Length = 85
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 79 cctccgtgaatggcgtatgaggagcc 104
|||||||| |||||||||||||||||
Sbjct: 52 cctccgtggatggcgtatgaggagcc 77
