miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
           cress)
          Length = 126

 Score =  121 bits (61), Expect = 2e-27
 Identities = 94/104 (90%), Gaps = 2/104 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   gagagagagacagggaacaagcagagcatggatcgagtttttaccaaaacatcaaatgac 63
           ||||||||||||||||||||||||||||||||| ||||||  || ||||||| ||| |||
Sbjct: 11  gagagagagacagggaacaagcagagcatggattgagttt--actaaaacattaaacgac 68

                                                       
Query: 64  tatgtttggtctcttcccatgcactgcctcttccctggctccct 107
           | | ||| |||||| |||||||||||||||||||||||||||||
Sbjct: 69  tcttttttgtctctacccatgcactgcctcttccctggctccct 112




>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
          Length = 125

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 74  ctcttcccatgcactgcctcttccctggctc 104
           |||| ||||||||||||||||||||||||||
Sbjct: 79  ctctacccatgcactgcctcttccctggctc 109




>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
          Length = 119

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 74  ctcttcccatgcactgcctcttccctggct 103
           |||| |||||||||||||||||||||||||
Sbjct: 72  ctctacccatgcactgcctcttccctggct 101




>RF00690;MIR408;AP008207.1/12284551-12284732 39947:Oryza sativa
           Japonica Group
          Length = 182

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 78  tcccatgcactgcctcttccctggctccc 106
           |||| ||||||||||||||||||||||||
Sbjct: 138 tcccctgcactgcctcttccctggctccc 166




>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
          Length = 156

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 81  catgcactgcctcttccctggctc 104
           ||||||||||||||||||||||||
Sbjct: 117 catgcactgcctcttccctggctc 140




>RF00690;MIR408;EU947091.1/49-229 4577:Zea mays
          Length = 181

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 78  tcccatgcactgcctcttccctggctcc 105
           |||| |||||||||||||||||||||||
Sbjct: 138 tcccctgcactgcctcttccctggctcc 165




>RF00690;MIR408;EU976649.1/72-263 4577:Zea mays
          Length = 192

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 78  tcccatgcactgcctcttccctggctcc 105
           |||| |||||||||||||||||||||||
Sbjct: 149 tcccctgcactgcctcttccctggctcc 176




>RF00690;MIR408;EU972352.1/61-243 4577:Zea mays
          Length = 183

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 78  tcccatgcactgcctcttccctggctcc 105
           |||| |||||||||||||||||||||||
Sbjct: 140 tcccctgcactgcctcttccctggctcc 167




>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
           (barrel medic)
          Length = 123

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 81  catgcactgcctcttccctggct 103
           |||||||||||||||||||||||
Sbjct: 83  catgcactgcctcttccctggct 105



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 11 agacagggaacaagcagagcatggat 36
          |||||||||||| |||||||||||||
Sbjct: 18 agacagggaacatgcagagcatggat 43




>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
           (papaya)
          Length = 124

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 83  tgcactgcctcttccctggctc 104
           ||||||||||||||||||||||
Sbjct: 86  tgcactgcctcttccctggctc 107




>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
           (castor bean)
          Length = 120

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 74  ctcttcccatgcactgcctcttccctggct 103
           |||| ||| |||||||||||||||||||||
Sbjct: 73  ctctacccctgcactgcctcttccctggct 102




>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
          Length = 137

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 81  catgcactgcctcttccctggc 102
           ||||||||||||||||||||||
Sbjct: 97  catgcactgcctcttccctggc 118