miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00688;MIR394;AC189318.1/31773-31892 51351:Brassica rapa subsp.
pekinensis
Length = 120
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 34 cagatttctttggcattctgtccacctcc 62
|||| ||||||||||||||||||||||||
Sbjct: 5 cagagttctttggcattctgtccacctcc 33
>RF00688;MIR394;ABIM01007450.1/10865-10745 3649:Carica papaya
(papaya)
Length = 121
Score = 48.1 bits (24), Expect = 7e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 225 ggaggtggacatactgtcaacggagctctgtt 256
|||||||| |||||||||||| ||||||||||
Sbjct: 88 ggaggtgggcatactgtcaacagagctctgtt 119
>RF00688;MIR394;AC189295.2/85926-86037 51351:Brassica rapa subsp.
pekinensis
Length = 112
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 tctttggcattctgtccacctccc 63
||||||||||||||||||||||||
Sbjct: 11 tctttggcattctgtccacctccc 34
>RF00688;MIR394;AACV01005112.1/32080-32191 39947:Oryza sativa
Japonica Group
Length = 112
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 ttctttggcattctgtccacctcc 62
||||||||||||||||||||||||
Sbjct: 12 ttctttggcattctgtccacctcc 35
>RF00688;MIR394;EU549378.1/213-333 3702:Arabidopsis thaliana
(thale cress)
Length = 121
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 tctttggcattctgtccacctcc 62
|||||||||||||||||||||||
Sbjct: 11 tctttggcattctgtccacctcc 33
>RF00688;MIR394;AC009978.3/24986-25106 3702:Arabidopsis thaliana
(thale cress)
Length = 121
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 tctttggcattctgtccacctcc 62
|||||||||||||||||||||||
Sbjct: 11 tctttggcattctgtccacctcc 33
>RF00688;MIR394;EU549400.1/212-328 3702:Arabidopsis thaliana
(thale cress)
Length = 117
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 tctttggcattctgtccacctcc 62
|||||||||||||||||||||||
Sbjct: 11 tctttggcattctgtccacctcc 33
>RF00688;MIR394;AARH01002882.1/31556-31654 3694:Populus trichocarpa
Length = 99
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 224 tggaggtggacatactgtcaacggagctctgttgg 258
||||||||| ||||||| |||| ||||||||||||
Sbjct: 65 tggaggtgggcatactgccaaccgagctctgttgg 99
>RF00688;MIR394;AARH01001039.1/148774-148676 3694:Populus
trichocarpa
Length = 99
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 224 tggaggtggacatactgtcaacggagctctgttgg 258
||||||||| ||||||| |||| ||||||||||||
Sbjct: 65 tggaggtgggcatactgccaactgagctctgttgg 99
>RF00688;MIR394;AASG02000377.1/56114-56246 3988:Ricinus communis
(castor bean)
Length = 133
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 224 tggaggtggacatactgtcaacggagctctgttgg 258
||||||||| ||||||| |||| ||||||||||||
Sbjct: 99 tggaggtgggcatactgccaactgagctctgttgg 133
