miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC021043.4/36317-36195 3702:Arabidopsis thaliana
(thale cress)
Length = 123
Score = 161 bits (81), Expect = 3e-39
Identities = 113/123 (91%), Gaps = 3/123 (2%)
Strand = Plus / Plus
Query: 17 aaatgcattacagggcaagatctctattggcagaaaaccattacttagatctttgcatct 76
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 aaatgcattacagggtaagatctctattggcaggaaaccattacttagatctttgcatct 60
Query: 77 ctttctgcattgattt---gtagtgagttctctgccaaaggagatttgcccggtaattct 133
|||| ||||||| ||| ||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 61 ctttatgcattgcttttaattagtgagttatctgccaaaggagatttgccctgtaattct 120
Query: 134 tct 136
|||
Sbjct: 121 tct 123
>RF00445;mir-399;AC004481.3/15484-15601 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 71.9 bits (36), Expect = 2e-12
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 90 tttgtagtgagttctctgccaaaggagatttgcccggtaattct 133
||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 72 tttgtggtgagctctctgccaaaggagatttgcccggtaattct 115
>RF00445;mir-399;ABIM01002716.1/17825-17941 3649:Carica papaya
(papaya)
Length = 117
Score = 60.0 bits (30), Expect = 9e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 95 agtgagttctctgccaaaggagatttgcccggtaattcttct 136
|||| |||| |||||||||||||||||||| |||||||||||
Sbjct: 76 agtgtgttccctgccaaaggagatttgcccagtaattcttct 117
>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
Length = 116
Score = 60.0 bits (30), Expect = 9e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 103 ctctgccaaaggagatttgcccggtaattcttct 136
|||||||||||||||||||||||| |||||||||
Sbjct: 83 ctctgccaaaggagatttgcccggcaattcttct 116
>RF00445;mir-399;ABIM01002717.1/16187-16280 3649:Carica papaya
(papaya)
Length = 94
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 105 ctgccaaaggagatttgcccggtaattcttct 136
|||||||||||||||||||||| |||||||||
Sbjct: 63 ctgccaaaggagatttgcccggcaattcttct 94
>RF00445;mir-399;AARH01014738.1/2159-2280 3694:Populus trichocarpa
Length = 122
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 106 tgccaaaggagatttgcccggtaattcttct 136
||||||||||||||||||||| |||||||||
Sbjct: 92 tgccaaaggagatttgcccggcaattcttct 122
>RF00445;mir-399;AASG02004610.1/3240-3121 3988:Ricinus communis
(castor bean)
Length = 120
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 104 tctgccaaaggagatttgcccggtaattcttct 136
||||||||||||||||||||| | |||||||||
Sbjct: 88 tctgccaaaggagatttgcccagcaattcttct 120
>RF00445;mir-399;ABIM01002717.1/22515-22407 3649:Carica papaya
(papaya)
Length = 109
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 105 ctgccaaaggagatttgcccggtaattc 132
|||||||||||||||||||||| |||||
Sbjct: 78 ctgccaaaggagatttgcccggcaattc 105
>RF00445;mir-399;AC004481.3/13564-13465 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 101 ttctctgccaaaggagatttgccc 124
||||||||||||||||||||||||
Sbjct: 65 ttctctgccaaaggagatttgccc 88
>RF00445;mir-399;AARH01004856.1/144755-144865 3694:Populus
trichocarpa
Length = 111
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 106 tgccaaaggagatttgcccggtaattcttct 136
|||||||| |||||||||||| |||||||||
Sbjct: 81 tgccaaagaagatttgcccggcaattcttct 111
>RF00445;mir-399;AP008212.1/20540927-20540811 39947:Oryza sativa
Japonica Group
Length = 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 102 tctctgccaaaggagatttgccc 124
|||||||||||||||||||||||
Sbjct: 83 tctctgccaaaggagatttgccc 105
>RF00445;mir-399;AARH01004856.1/135040-135154 3694:Populus
trichocarpa
Length = 115
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 20 tgcattacagggcaagatctctattggcag 49
||||||||||||||||| ||| ||||||||
Sbjct: 4 tgcattacagggcaagacctccattggcag 33
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 103 ctctgccaaaggagatttgcccggtaattcttct 136
||||||||||||||||||| |||| || ||||||
Sbjct: 82 ctctgccaaaggagatttgtccggcaaatcttct 115
>RF00445;mir-399;ABXC01006771.1/34940-34840 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 103 ctctgccaaaggagatttgccc 124
||||||||||||||||||||||
Sbjct: 68 ctctgccaaaggagatttgccc 89
