miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AC152551.33/14978-14893 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 99.6 bits (50), Expect = 1e-20
Identities = 78/86 (90%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 31 gtgacagaagagagtgagcacacatg-tattttcttgcatgatgtttcatgcttgaagct 89
|||||||||||||||||||||||||| || |||| || |||||||||||| || ||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtactttcgtgtatgatgtttcattctcgaagct 60
Query: 90 atgcgtgctcactttctatctgtcac 115
||| ||||||||| ||||||||||||
Sbjct: 61 atgtgtgctcactctctatctgtcac 86
>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
Length = 88
Score = 95.6 bits (48), Expect = 2e-19
Identities = 81/88 (92%), Gaps = 3/88 (3%)
Strand = Plus / Plus
Query: 31 gtgacagaagagagtgagcacacatg-tattttcttgcatgatgttt-catgcttgaagc 88
|||||||||||||||||||||| ||| | ||||| ||||||||||| ||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacatatggtcttttcaagcatgatgtttacatgcttgaagc 60
Query: 89 tatgcgtgctcactt-tctatctgtcac 115
||||||||||||||| ||||||||||||
Sbjct: 61 tatgcgtgctcacttctctatctgtcac 88
>RF00073;mir-156;AP009515.1/86721-86633 4081:Solanum lycopersicum
Length = 89
Score = 83.8 bits (42), Expect = 6e-16
Identities = 80/89 (89%), Gaps = 4/89 (4%)
Strand = Plus / Plus
Query: 31 gtgacagaagagagtgagcacacat-gtattttcttgcatgatgttt--catgcttgaag 87
||||||||||||||||||||||||| || |||||| ||||||||||| ||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtgttttctagcatgatgttttacatgcttgaaa 60
Query: 88 ctatgcgtgctcact-ttctatctgtcac 115
||||| ||||||||| ||||||||||||
Sbjct: 61 ctatgtgtgctcactgctctatctgtcac 89
>RF00073;mir-156;AM455203.2/879-962 29760:Vitis vinifera
Length = 84
Score = 83.8 bits (42), Expect = 6e-16
Identities = 76/85 (89%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 31 gtgacagaagagagtgagcacacatg-tattttcttgcatgatgtttcatgcttgaagct 89
|||||||||||||||||||||||||| | | |||||||||| | | |||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtctgttcttgcatg--ggtccatgcttgaagct 58
Query: 90 atgcgtgctcactttctatctgtca 114
|||||||||||| |||||||||||
Sbjct: 59 ctgcgtgctcactctctatctgtca 83
>RF00073;mir-156;AARH01003139.1/114039-113955 3694:Populus
trichocarpa
Length = 85
Score = 75.8 bits (38), Expect = 1e-13
Identities = 76/86 (88%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 31 gtgacagaagagagtgagcacacatg-tattttcttgcatgatgtttcatgcttgaagct 89
|||||||||||||||||||||||| | || |||||||||||| | |||||||||| ||
Sbjct: 1 gtgacagaagagagtgagcacacagggtactttcttgcatgacatc-catgcttgaaact 59
Query: 90 atgcgtgctcactttctatctgtcac 115
|||||||||||| ||||||||||||
Sbjct: 60 ttgcgtgctcactctctatctgtcac 85
>RF00073;mir-156;AP009602.1/5236-5150 4081:Solanum lycopersicum
Length = 87
Score = 73.8 bits (37), Expect = 6e-13
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 31 gtgacagaagagagtgagcacacatgtattttcttgcatgatgttt-catgcttgaagct 89
|||||||||||| ||||||||| ||| |||||| ||||||||||| ||||||||| ||
Sbjct: 1 gtgacagaagagcgtgagcacatgtgtgttttctagcatgatgtttatatgcttgaatct 60
Query: 90 atgcgtgctcact 102
|||||||||||||
Sbjct: 61 atgcgtgctcact 73
>RF00073;mir-156;AASG02007740.1/7202-7285 3988:Ricinus communis
(castor bean)
Length = 84
Score = 69.9 bits (35), Expect = 9e-12
Identities = 75/86 (87%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 31 gtgacagaagagagtgagcacacat-gtattttcttgcatgatgtttcatgcttgaagct 89
||||||||||||||||||||||||| ||| |||| ||||||| |||||||| |||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtactttcctgcatga--attcatgctcgaagcc 58
Query: 90 atgcgtgctcactttctatctgtcac 115
|||||||| ||| ||||||||||||
Sbjct: 59 ttgcgtgcttactctctatctgtcac 84
>RF00073;mir-156;AP010362.1/32796-32877 34305:Lotus japonicus
Length = 82
Score = 65.9 bits (33), Expect = 1e-10
Identities = 74/86 (86%), Gaps = 5/86 (5%)
Strand = Plus / Plus
Query: 31 gtgacagaagagagtgagcacacatg-tattttcttgcatgatgtttcatgcttgaagct 89
|||||||||||||||||||||||||| | ||||||||| ||||||||||||||| |
Sbjct: 1 gtgacagaagagagtgagcacacatggtgctttcttgca----gtttcatgcttgaagtt 56
Query: 90 atgcgtgctcactttctatctgtcac 115
|| |||||||| ||||||||||||
Sbjct: 57 atatgtgctcaccctctatctgtcac 82
>RF00073;mir-156;ABIM01007853.1/18159-18072 3649:Carica papaya
(papaya)
Length = 88
Score = 61.9 bits (31), Expect = 2e-09
Identities = 74/86 (86%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacacatg--tattttcttgcat-gatgtttcatgcttgaagc 88
|||||||||||||||||||| |||| ||||||||||| |||||| |||||| |||||
Sbjct: 2 tgacagaagagagtgagcacccatggcgtttttcttgcatggatgttccatgctcgaagc 61
Query: 89 tatgcgtgctcactttctatctgtca 114
| ||||||||| || ||| |||||||
Sbjct: 62 tctgcgtgctctctctctctctgtca 87
>RF00073;mir-156;EU548405.1/118-209 3702:Arabidopsis thaliana (thale
cress)
Length = 92
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 73 gtttcatgcttgaagctatgcgtgctcactttctatctgtcac 115
|||||||||||||||||||| ||||||||| |||||| |||||
Sbjct: 50 gtttcatgcttgaagctatgtgtgctcactctctatccgtcac 92
>RF00073;mir-156;AP009602.1/17046-16952 4081:Solanum lycopersicum
Length = 95
Score = 61.9 bits (31), Expect = 2e-09
Identities = 44/47 (93%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 31 gtgacagaagagagtgagcacacat-gtattttcttgcatgatgttt 76
|||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct: 1 gtgatagaagagagtgagcacacatggtgttttcttgcatgatgttt 47
>RF00073;mir-156;AM467075.2/5013-4925 29760:Vitis vinifera
Length = 89
Score = 56.0 bits (28), Expect = 1e-07
Identities = 62/71 (87%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 31 gtgacagaagagagtgagcacacatg--tattttcttgcatgatgtttc-atgcttgaag 87
|||||||| |||||||||||| |||| | ||||||||||||| ||||| ||||||||||
Sbjct: 1 gtgacagaggagagtgagcactcatggttcttttcttgcatgaagtttctatgcttgaag 60
Query: 88 ctatgcgtgct 98
|| || |||||
Sbjct: 61 ctctgtgtgct 71
>RF00073;mir-156;EU548379.1/158-255 3702:Arabidopsis thaliana (thale
cress)
Length = 98
Score = 54.0 bits (27), Expect = 5e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 73 gtttcatgcttgaagctatgcgtgctcactttctatctgtcac 115
|||||||||||||||||||| ||||| ||| ||| ||||||||
Sbjct: 56 gtttcatgcttgaagctatgtgtgcttactctctctctgtcac 98
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 31 gtgacagaagagagtgagcacacatg 56
||||||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatg 26
>RF00073;mir-156;AASG02002418.1/21340-21254 3988:Ricinus communis
(castor bean)
Length = 87
Score = 54.0 bits (27), Expect = 5e-07
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 31 gtgacagaagagagtgagcacacatgtattttcttgcat 69
|||||||||||||||||||||||||| |||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatg-gttttcttgcat 38
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacacatg 56
|||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatg 26
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 75 ttcatgcttgaagctatgcgtgctcactt 103
|||||||||||||||||| ||||||||||
Sbjct: 62 ttcatgcttgaagctatgtgtgctcactt 90
>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
Length = 93
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacacatg 56
|||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatg 26
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 76 tcatgcttgaagctatgcgtgctcactt 103
||||||||||||||||| ||||||||||
Sbjct: 53 tcatgcttgaagctatgtgtgctcactt 80
>RF00073;mir-156;AC005917.3/7348-7264 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 33 gacagaagagagtgagcacacatg 56
||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacatg 26
>RF00073;mir-156;ABIM01019325.1/182-263 3649:Carica papaya
(papaya)
Length = 82
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacaca 54
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AL391222.1/7873-7786 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacaca 54
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;EU548281.1/284-201 3702:Arabidopsis thaliana
(thale cress)
Length = 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacaca 54
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AARH01007531.1/19950-19866 3694:Populus
trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacaca 54
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AARH01003087.1/284432-284516 3694:Populus
trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacaca 54
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AASG02001561.1/34616-34535 3988:Ricinus communis
(castor bean)
Length = 82
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacaca 54
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AM456699.2/13257-13176 29760:Vitis vinifera
Length = 82
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacaca 54
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;ABXC01004344.1/59682-59592 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gtgacagaagagagtgagcacac 53
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>RF00073;mir-156;ABXC01002848.1/26684-26598 4558:Sorghum bicolor
(sorghum)
Length = 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gtgacagaagagagtgagcacac 53
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>RF00073;mir-156;ABXC01001718.1/172900-172815 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacaca 54
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;ABXC01004937.1/5197-5315 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacaca 54
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AAAA02006911.1/103-14 39946:Oryza sativa Indica
Group
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gtgacagaagagagtgagcacac 53
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>RF00073;mir-156;AP005286.3/98217-98130 39947:Oryza sativa
Japonica Group
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gtgacagaagagagtgagcacac 53
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>RF00073;mir-156;AP005429.3/80050-80161 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacaca 54
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AP003332.4/36088-35998 39947:Oryza sativa
Japonica Group
Length = 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gtgacagaagagagtgagcacac 53
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>RF00073;mir-156;AAAA02027469.1/16633-16520 39946:Oryza sativa
Indica Group
Length = 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacaca 54
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;EU004275.2/501-588 39946:Oryza sativa Indica
Group
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacaca 54
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 77 catgcttgaagctatgcgtgctcactttctatctgtca 114
|||||| | |||| |||||||||||| |||||||||||
Sbjct: 50 catgctgggagctgtgcgtgctcactctctatctgtca 87
>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
(papaya)
Length = 82
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacac 53
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AASG02015394.1/3647-3565 3988:Ricinus communis
(castor bean)
Length = 83
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacac 53
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AP010300.1/44116-44196 34305:Lotus japonicus
Length = 81
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacac 53
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacac 53
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AK073452.1/342-427 39947:Oryza sativa Japonica
Group
Length = 86
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacac 53
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;CU406049.1/183-270 4529:Oryza rufipogon
Length = 88
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacac 53
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;ABEU01000369.1/338030-338109
145481:Physcomitrella patens subsp. patens
Length = 80
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 gtgacagaagagagtgagcaca 52
||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcaca 22
>RF00073;mir-156;ABEU01001319.1/101465-101387
145481:Physcomitrella patens subsp. patens
Length = 79
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 gtgacagaagagagtgagcaca 52
||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcaca 22
