miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 9 cactggatgcagcggttcatcgatctgttcc 39
|||||||||||||||||||||||||||||||
Sbjct: 1 cactggatgcagcggttcatcgatctgttcc 31
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 119 gaatcggtcgataaacctctgcatccagc 147
|||||||||||||||||||||||||||||
Sbjct: 62 gaatcggtcgataaacctctgcatccagc 90
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 118 ggaatcggtcgataaacctctgcatccagc 147
||||||||||||||||||||||||||||||
Sbjct: 104 ggaatcggtcgataaacctctgcatccagc 133
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 119 gaatcggtcgataaacctctgcatccagc 147
|||||||||||||||||||||||||||||
Sbjct: 60 gaatcggtcgataaacctctgcatccagc 88
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 cactggatgcagcggttcatcgatctgttcc 39
|||||||||||||||||||||||||| ||||
Sbjct: 1 cactggatgcagcggttcatcgatctcttcc 31
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 118 ggaatcggtcgataaacctctgcatccagc 147
||||||| ||||||||||||||||||||||
Sbjct: 103 ggaatcgatcgataaacctctgcatccagc 132
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 119 gaatcggtcgataaacctctgcatccagc 147
|||||| ||||||||||||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatccagc 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 cactggatgcagcggttcatcgatctgttcc 39
||||||| |||||||||||||||||| ||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcc 31
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 119 gaatcggtcgataaacctctgcatccagc 147
|||||| ||||||||||||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 119 gaatcggtcgataaacctctgcatccagc 147
|||||| ||||||||||||||||||||||
Sbjct: 68 gaatcgatcgataaacctctgcatccagc 96
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 cactggatgcagcggttcatcgatctgttcc 39
||||||| |||||||||||||||||| ||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcc 31
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 118 ggaatcggtcgataaacctctgcatccag 146
||||||| |||||||||||||||||||||
Sbjct: 129 ggaatcgatcgataaacctctgcatccag 157
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 118 ggaatcggtcgataaacctctgcatccag 146
||||||| |||||||||||||||||||||
Sbjct: 130 ggaatcgatcgataaacctctgcatccag 158
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 cactggatgcagcggttcatcgatctgttcc 39
||||||| |||||||||||||||||| ||||
Sbjct: 1 cactggaggcagcggttcatcgatcttttcc 31
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 cactggatgcagcggttcatcgatctgttcc 39
||||||| |||||||||||||||||| ||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcc 31
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 126 tcgataaacctctgcatccagc 147
||||||||||||||||||||||
Sbjct: 70 tcgataaacctctgcatccagc 91
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 126 tcgataaacctctgcatccagc 147
||||||||||||||||||||||
Sbjct: 67 tcgataaacctctgcatccagc 88
>RF00742;MIR162_2;AACV01010015.1/69608-69724 39947:Oryza sativa
Japonica Group
Length = 117
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 117 aggaatcggtcgataaacctctgcatccag 146
|||||||| ||||||| |||||||||||||
Sbjct: 87 aggaatcgatcgataagcctctgcatccag 116
