miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF059989.1/365637-365513 29664:Brachypodium
           sylvaticum
          Length = 125

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 87  catttaatatgggacggagggagta 111
           |||||||||||||||||||||||||
Sbjct: 97  catttaatatgggacggagggagta 121




>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
           distachyon
          Length = 124

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 85  gacatttaatatgggacggagggagta 111
           |||| ||||||||||||||||||||||
Sbjct: 94  gacacttaatatgggacggagggagta 120




>RF00906;MIR1122;AAAA02027770.1/12261-12396 39946:Oryza sativa
           Indica Group
          Length = 136

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 14  tactccctccgtcccatacaaaa 36
           |||||||||||||||||||||||
Sbjct: 132 tactccctccgtcccatacaaaa 110




>RF00906;MIR1122;AK248893.1/1282-1190 112509:Hordeum vulgare
          subsp. vulgare (domesticated barley)
          Length = 93

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 10 atagtactccctccgtcccata 31
          ||||||||||||||||||||||
Sbjct: 93 atagtactccctccgtcccata 72




>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
           sylvaticum
          Length = 125

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 90  ttaatatgggacggagggagta 111
           ||||||||||||||||||||||
Sbjct: 26  ttaatatgggacggagggagta 5



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 90  ttaatatgggacggagggagta 111
           ||||||||||||||||||||||
Sbjct: 100 ttaatatgggacggagggagta 121




>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
           distachyon
          Length = 126

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 90  ttaatatgggacggagggagta 111
           ||||||||||||||||||||||
Sbjct: 26  ttaatatgggacggagggagta 5



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 90  ttaatatgggacggagggagta 111
           ||||||||||||||||||||||
Sbjct: 101 ttaatatgggacggagggagta 122




>RF00906;MIR1122;EU730895.1/70118-69993 15368:Brachypodium
           distachyon
          Length = 126

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 90  ttaatatgggacggagggagta 111
           ||||||||||||||||||||||
Sbjct: 26  ttaatatgggacggagggagta 5




>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
           sylvaticum
          Length = 126

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 90  ttaatatgggacggagggagta 111
           ||||||||||||||||||||||
Sbjct: 101 ttaatatgggacggagggagta 122




>RF00906;MIR1122;AAAA02012853.1/6255-6365 39946:Oryza sativa
          Indica Group
          Length = 111

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 12 agtactccctccgtcccatacaaaaa 37
          |||||||||||||||||||| |||||
Sbjct: 3  agtactccctccgtcccataaaaaaa 28