miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 272 bits (137), Expect = 2e-72
Identities = 181/193 (93%), Gaps = 2/193 (1%)
Strand = Plus / Plus
Query: 8 gaagtagagctccttaaagttcaaacgagagtttagcagggtaaagaaaagctgctaagc 67
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 7 gaagtagagctccttaaagttcaaacatgagttgagcagggtaaagaaaagctgctaagc 66
Query: 68 tatggatcccataagccctaa-ccttaaacatagaaaaaggattttggttatatggcttg 126
||||||||||||||||||||| |||| | | ||||||||||| |||||||||| |||
Sbjct: 67 tatggatcccataagccctaatccttgtaaagtaaaaaaggattt-ggttatatggattg 125
Query: 127 catatctcaggagctttaacttgccctttaatggcttttactcttctttggattgaaggg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 catatctcaggagctttaacttgccctttaatggcttttactcttctttggattgaaggg 185
Query: 187 agctctacatctt 199
|||||||||||||
Sbjct: 186 agctctacatctt 198
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 95.6 bits (48), Expect = 2e-19
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 13 agagctccttaaagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgg 72
|||||||||| |||||||| ||| |||||||||||| ||| ||||||||||||||||||
Sbjct: 12 agagctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagctatgg 71
Query: 73 atcccataagcc 84
||||||||||||
Sbjct: 72 atcccataagcc 83
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 173 tttggattgaagggagctctacatct 198
||||||||||||||||||||||||||
Sbjct: 162 tttggattgaagggagctctacatct 187
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 120 tggcttgcatatctcaggagctt 142
|||||||||||||||||||||||
Sbjct: 116 tggcttgcatatctcaggagctt 138
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 171 tctttggattgaagggagctctacatcttt 200
|||||||||||||||||||||| |||||||
Sbjct: 240 tctttggattgaagggagctctgcatcttt 269
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 171 tctttggattgaagggagctctacatctt 199
|||||||||||||||||||||| ||||||
Sbjct: 153 tctttggattgaagggagctctgcatctt 181
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 121 ggcttgcatatctcaggagcttta 144
||||||||||||||||||||||||
Sbjct: 101 ggcttgcatatctcaggagcttta 124
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 121 ggcttgcatatctcaggagcttta 144
||||||||||||||||||||||||
Sbjct: 109 ggcttgcatatctcaggagcttta 132
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 173 tttggattgaagggagctctacat 196
||||||||||||||||||||||||
Sbjct: 168 tttggattgaagggagctctacat 191
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 173 tttggattgaagggagctctaca 195
|||||||||||||||||||||||
Sbjct: 162 tttggattgaagggagctctaca 184
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 173 tttggattgaagggagctctaca 195
|||||||||||||||||||||||
Sbjct: 162 tttggattgaagggagctctaca 184
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 120 tggcttgcatatctcaggagct 141
||||||||||||||||||||||
Sbjct: 116 tggcttgcatatctcaggagct 137
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 171 tctttggattgaagggagctctacatc 197
|||||||||||||||||||||| ||||
Sbjct: 199 tctttggattgaagggagctctgcatc 225
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 171 tctttggattgaagggagctctacatc 197
|||||||||||||||||||||| ||||
Sbjct: 210 tctttggattgaagggagctctgcatc 236
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 174 ttggattgaagggagctctaca 195
||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctaca 180
