miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;CR954190.2/110040-110176 3880:Medicago truncatula
(barrel medic)
Length = 137
Score = 48.1 bits (24), Expect = 9e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 59 acatactccctccgtcccaaaatttaag 86
||||||||||||||||||||||| ||||
Sbjct: 2 acatactccctccgtcccaaaatgtaag 29
>RF00906;MIR1122;AAAA02018379.1/19319-19440 39946:Oryza sativa
Indica Group
Length = 122
Score = 48.1 bits (24), Expect = 9e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 58 aacatactccctccgtcccaaaat 81
||||||||||||||||||||||||
Sbjct: 122 aacatactccctccgtcccaaaat 99
>RF00906;MIR1122;AP005421.3/127890-127779 39947:Oryza sativa
Japonica Group
Length = 112
Score = 48.1 bits (24), Expect = 9e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 59 acatactccctccgtcccaaaatttaag 86
||||||||||||||||||||||| ||||
Sbjct: 2 acatactccctccgtcccaaaatataag 29
>RF00906;MIR1122;AAAA02028442.1/1248-1113 39946:Oryza sativa
Indica Group
Length = 136
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 acatactccctccgtcccaaaat 81
|||||||||||||||||||||||
Sbjct: 2 acatactccctccgtcccaaaat 24
>RF00906;MIR1122;AAAA02022585.1/6052-5955 39946:Oryza sativa
Indica Group
Length = 98
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 58 aacatactccctccgtcccaaaa 80
|||||||||||||||||||||||
Sbjct: 98 aacatactccctccgtcccaaaa 76
>RF00906;MIR1122;AAAA02004642.1/60119-60040 39946:Oryza sativa
Indica Group
Length = 80
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 aacatactccctccgtcccaaaa 80
|||||||||||||||||||||||
Sbjct: 1 aacatactccctccgtcccaaaa 23
>RF00906;MIR1122;AC232160.1/3827-3951 63629:Oryza minuta
Length = 125
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 atactccctccgtcccaaaatttaagt 87
||||||||||||||||||||| |||||
Sbjct: 4 atactccctccgtcccaaaatataagt 30
>RF00906;MIR1122;AC215820.3/114332-114188 4537:Oryza punctata
Length = 145
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 60 catactccctccgtcccaaaatttaag 86
|||||||||||||||||||||| ||||
Sbjct: 3 catactccctccgtcccaaaatataag 29
>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
Japonica Group
Length = 92
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 acatactccctccgtcccaaaat 81
|||||||||||||||||||||||
Sbjct: 2 acatactccctccgtcccaaaat 24
>RF00906;MIR1122;AC210491.1/95749-95858 4538:Oryza glaberrima
(African rice)
Length = 110
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 61 atactccctccgtcccaaaatttaagt 87
||||||||||||||||||||| |||||
Sbjct: 107 atactccctccgtcccaaaatataagt 81
>RF00906;MIR1122;AACV01023551.1/12075-12186 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 atactccctccgtcccaaaatttaagt 87
||||||||||||||||||||| |||||
Sbjct: 4 atactccctccgtcccaaaatataagt 30
>RF00906;MIR1122;AACV01020861.1/25006-25108 39947:Oryza sativa
Japonica Group
Length = 103
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 acatactccctccgtcccaaaat 81
|||||||||||||||||||||||
Sbjct: 2 acatactccctccgtcccaaaat 24
>RF00906;MIR1122;AP003303.4/77673-77577 39947:Oryza sativa
Japonica Group
Length = 97
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 acatactccctccgtcccaaaat 81
|||||||||||||||||||||||
Sbjct: 2 acatactccctccgtcccaaaat 24
>RF00906;MIR1122;AP008216.1/16113535-16113433 39947:Oryza sativa
Japonica Group
Length = 103
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 tactccctccgtcccaaaattta 84
|||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaattta 27
>RF00906;MIR1122;AP008215.1/18970521-18970611 39947:Oryza sativa
Japonica Group
Length = 91
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 acatactccctccgtcccaaaat 81
|||||||||||||||||||||||
Sbjct: 2 acatactccctccgtcccaaaat 24
>RF00906;MIR1122;AP003412.4/28754-28834 39947:Oryza sativa
Japonica Group
Length = 81
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 aacatactccctccgtcccaaaa 80
|||||||||||||||||||||||
Sbjct: 1 aacatactccctccgtcccaaaa 23
