miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF427791.1/222786-222921 4513:Hordeum vulgare
Length = 136
Score = 58.0 bits (29), Expect = 7e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 244 gacaataattttgggacggagggagtact 272
|||||||||||||||||||||||||||||
Sbjct: 31 gacaataattttgggacggagggagtact 3
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 244 gacaataattttgggacggagggagtac 271
||||| ||||||||||||||||||||||
Sbjct: 31 gacaacaattttgggacggagggagtac 4
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 244 gacaataattttgggacggagggagtac 271
||||| ||||||||||||||||||||||
Sbjct: 31 gacaagaattttgggacggagggagtac 4
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 244 gacaataattttgggacggagggagtac 271
||||| ||||||||||||||||||||||
Sbjct: 106 gacaagaattttgggacggagggagtac 133
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 244 gacaataattttgggacggagggagta 270
||||| |||||||||||||||||||||
Sbjct: 31 gacaagaattttgggacggagggagta 5
>RF00906;MIR1122;AACV01001520.1/25871-25960 39947:Oryza sativa
Japonica Group
Length = 90
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 251 attttgggacggagggagtacttt 274
||||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtacttt 1
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 244 gacaataattttgggacggagggagtacttt 274
||||| ||||||||||| |||||||||||||
Sbjct: 31 gacaagaattttgggaccgagggagtacttt 1
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 245 acaataattttgggacggagggagtac 271
|||| ||||||||||||||||||||||
Sbjct: 106 acaagaattttgggacggagggagtac 132
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 244 gacaataattttgggacggagggagta 270
||||| |||||||||||||||||||||
Sbjct: 105 gacaagaattttgggacggagggagta 131
>RF00906;MIR1122;EU626553.1/30213-30109 4572:Triticum urartu
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 244 gacaataattttgggacggagggagta 270
||||| |||||||||||||||||||||
Sbjct: 75 gacaagaattttgggacggagggagta 101
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 244 gacaataattttgggacggagggagta 270
||||| |||||||||||||||||||||
Sbjct: 106 gacaagaattttgggacggagggagta 132
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 244 gacaataattttgggacggagggagta 270
||||| |||||||||||||||||||||
Sbjct: 112 gacaagaattttgggacggagggagta 138
>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 244 gacaataattttgggacggagggagta 270
|||||| ||||||||||||||||||||
Sbjct: 75 gacaattattttgggacggagggagta 101
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 244 gacaataattttgggacggagggagta 270
||||| |||||||||||||||||||||
Sbjct: 31 gacaagaattttgggacggagggagta 5
>RF00906;MIR1122;AAAA02002553.1/2264-2375 39946:Oryza sativa Indica
Group
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 251 attttgggacggagggagtactt 273
|||||||||||||||||||||||
Sbjct: 89 attttgggacggagggagtactt 111
>RF00906;MIR1122;AAAA02033081.1/3802-3711 39946:Oryza sativa Indica
Group
Length = 92
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 251 attttgggacggagggagtactt 273
|||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtactt 2
>RF00906;MIR1122;CT832702.1/1285-1384 39946:Oryza sativa Indica
Group
Length = 100
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 251 attttgggacggagggagtactt 273
|||||||||||||||||||||||
Sbjct: 77 attttgggacggagggagtactt 99
>RF00906;MIR1122;AAAA02015207.1/7418-7517 39946:Oryza sativa Indica
Group
Length = 100
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 251 attttgggacggagggagtactt 273
|||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtactt 2
>RF00906;MIR1122;AAAA02010499.1/21534-21382 39946:Oryza sativa
Indica Group
Length = 153
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 251 attttgggacggagggagtactt 273
|||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtactt 2
>RF00906;MIR1122;AP004994.2/80471-80627 39947:Oryza sativa Japonica
Group
Length = 157
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 251 attttgggacggagggagtactt 273
|||||||||||||||||||||||
Sbjct: 134 attttgggacggagggagtactt 156
