miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 52.0 bits (26), Expect = 4e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 9 aaatactccctccgtccctaaataagtgtc 38
|||||||||||||||||| |||||||||||
Sbjct: 103 aaatactccctccgtcccaaaataagtgtc 74
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 atactccctccgtccctaaataagtgtc 38
|||||||||||||||| |||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 52.0 bits (26), Expect = 4e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 9 aaatactccctccgtccctaaataagtgtc 38
|||||||||||||||||| |||||||||||
Sbjct: 2 aaatactccctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;AP004736.2/17089-17220 39947:Oryza sativa
Japonica Group
Length = 132
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 aaaatactccctccgtccctaaata 32
|||||||||||||||||||||||||
Sbjct: 1 aaaatactccctccgtccctaaata 25
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 11 atactccctccgtccctaaataagtgtc 38
|||||||||||||||| |||||||||||
Sbjct: 102 atactccctccgtcccaaaataagtgtc 75
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 11 atactccctccgtccctaaataagtgtc 38
|||||||||||||||| |||||||||||
Sbjct: 102 atactccctccgtcccaaaataagtgtc 75
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtccctaaataagtgtc 38
||||||||||||||| |||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 atactccctccgtccctaaataagtgtc 38
|||||||||||||||| |||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtgtc 31
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 243 gacatttatttagggacggagggagta 269
||||||||||| |||||||||||||||
Sbjct: 75 gacatttattttgggacggagggagta 101
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 atactccctccgtccctaaataagtgtc 38
|||||||||||||||| |||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtgtc 31
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 243 gacatttatttagggacggagggagta 269
||||||||||| |||||||||||||||
Sbjct: 75 gacatttattttgggacggagggagta 101
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 11 atactccctccgtccctaaataagtgtc 38
|||||||||||||||| |||||||||||
Sbjct: 103 atactccctccgtcccaaaataagtgtc 76
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtccctaaataagtgtc 38
||||||||||||||| |||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtc 31
>RF01058;MIR806;CR855092.1/95501-95738 4530:Oryza sativa (rice)
Length = 238
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 248 ttatttagggacggagggagtaa 270
|||||||||||||||||||||||
Sbjct: 23 ttatttagggacggagggagtaa 1
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 8 aaaatactccctccgtccctaaataagtgtc 38
||||||||||||||||||| |||||| ||||
Sbjct: 105 aaaatactccctccgtcccaaaataactgtc 75
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtccctaaataagtgtc 38
||||||||||||||| |||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 8 aaaatactccctccgtccctaaataagtgtc 38
||||||||||||||||||| |||||| ||||
Sbjct: 105 aaaatactccctccgtcccaaaataactgtc 75
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtccctaaataagtgtc 38
||||||||||||||| |||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 12 tactccctccgtccctaaataagtgtc 38
||||||||||||||| |||||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtc 75
>RF00906;MIR1122;AACV01003381.1/5259-5104 39947:Oryza sativa
Japonica Group
Length = 156
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 aatactccctccgtccctaaata 32
|||||||||||||||||||||||
Sbjct: 3 aatactccctccgtccctaaata 25
>RF00906;MIR1122;AAAA02005173.1/305-150 39946:Oryza sativa Indica
Group
Length = 156
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 aatactccctccgtccctaaata 32
|||||||||||||||||||||||
Sbjct: 154 aatactccctccgtccctaaata 132
>RF00906;MIR1122;AC092779.5/114881-115036 39947:Oryza sativa
Japonica Group
Length = 156
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 aatactccctccgtccctaaata 32
|||||||||||||||||||||||
Sbjct: 3 aatactccctccgtccctaaata 25
>RF00906;MIR1122;AAAA02022392.1/33564-33694 39946:Oryza sativa
Indica Group
Length = 131
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 aatactccctccgtccctaaata 32
|||||||||||||||||||||||
Sbjct: 129 aatactccctccgtccctaaata 107
>RF00906;MIR1122;AP005896.3/119867-120022 39947:Oryza sativa
Japonica Group
Length = 156
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 aatactccctccgtccctaaata 32
|||||||||||||||||||||||
Sbjct: 3 aatactccctccgtccctaaata 25
>RF00906;MIR1122;AAAA02021208.1/38295-38158 39946:Oryza sativa
Indica Group
Length = 138
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 247 tttatttagggacggagggagta 269
|||||||||||||||||||||||
Sbjct: 112 tttatttagggacggagggagta 134
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 atactccctccgtccctaaataa 33
|||||||||||||||||||||||
Sbjct: 135 atactccctccgtccctaaataa 113
>RF00906;MIR1122;AP006458.4/60963-61093 39947:Oryza sativa Japonica
Group
Length = 131
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 aatactccctccgtccctaaata 32
|||||||||||||||||||||||
Sbjct: 129 aatactccctccgtccctaaata 107
