miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 146 acaataattttgagacggagggagtaa 172
|||||||||||||||||||||||||||
Sbjct: 30 acaataattttgagacggagggagtaa 4
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 tactccctccgtctcaaaattattgt 36
||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtctcaaaattattgt 30
>RF00906;MIR1122;EU660895.1/53244-53110 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 atactccctccgtctcaaaattattgtc 37
|||||||||||||||||||||| |||||
Sbjct: 4 atactccctccgtctcaaaattcttgtc 31
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 145 gacaataattttgagacggagggagta 171
||||| |||||||||||||||||||||
Sbjct: 31 gacaagaattttgagacggagggagta 5
>RF00906;MIR1122;AAAA02019740.1/10862-10702 39946:Oryza sativa
Indica Group
Length = 161
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 tttatactccctccgtctcaaaat 30
||||||||||||||||||||||||
Sbjct: 161 tttatactccctccgtctcaaaat 138
>RF00906;MIR1122;AAAA02009170.1/19955-20066 39946:Oryza sativa
Indica Group
Length = 112
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 152 attttgagacggagggagtaacaa 175
||||||||||||||||||||||||
Sbjct: 89 attttgagacggagggagtaacaa 112
>RF00906;MIR1122;AACV01006837.1/19056-19167 39947:Oryza sativa
Japonica Group
Length = 112
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 152 attttgagacggagggagtaacaa 175
||||||||||||||||||||||||
Sbjct: 89 attttgagacggagggagtaacaa 112
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 8 ttatactccctccgtctcaaaat 30
|||||||||||||||||||||||
Sbjct: 104 ttatactccctccgtctcaaaat 82
>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
Length = 104
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 11 tactccctccgtctcaaaattattgtc 37
|||||||||||||||||||| ||||||
Sbjct: 100 tactccctccgtctcaaaataattgtc 74
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 145 gacaataattttgagacggagggagta 171
|||||| ||||||||||||||||||||
Sbjct: 74 gacaattattttgagacggagggagta 100
>RF00906;MIR1122;AF427791.1/222786-222921 4513:Hordeum vulgare
Length = 136
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 145 gacaataattttgagacggagggagta 171
||||||||||||| |||||||||||||
Sbjct: 31 gacaataattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 tactccctccgtctcaaaattattgtc 37
||||||||||||| |||||||||||||
Sbjct: 5 tactccctccgtcccaaaattattgtc 31
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 8 ttatactccctccgtctcaaaattattgtc 37
|||||||||||||||| ||||||| |||||
Sbjct: 141 ttatactccctccgtcccaaaattcttgtc 112
>RF00906;MIR1122;FJ581044.1/175385-175266 4538:Oryza glaberrima
(African rice)
Length = 120
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 tatactccctccgtctcaaaat 30
||||||||||||||||||||||
Sbjct: 118 tatactccctccgtctcaaaat 97
>RF00906;MIR1122;AAAA02000585.1/2941-3070 39946:Oryza sativa Indica
Group
Length = 130
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 tatactccctccgtctcaaaat 30
||||||||||||||||||||||
Sbjct: 128 tatactccctccgtctcaaaat 107
>RF00906;MIR1122;AC130607.2/121928-122037 39947:Oryza sativa
Japonica Group
Length = 110
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tatactccctccgtctcaaaat 30
||||||||||||||||||||||
Sbjct: 3 tatactccctccgtctcaaaat 24
>RF00906;MIR1122;AAAA02026044.1/32315-32427 39946:Oryza sativa
Indica Group
Length = 113
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 152 attttgagacggagggagtaac 173
||||||||||||||||||||||
Sbjct: 90 attttgagacggagggagtaac 111
