miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF059989.1/55128-55252 29664:Brachypodium
sylvaticum
Length = 125
Score = 113 bits (57), Expect = 3e-25
Identities = 73/77 (94%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 cctaaattgttgtcgaaatattagatgtatctagacgctttttaaaaatagatacatcca 60
||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||
Sbjct: 18 cctaaattgttgtcgaaatattacatgtatctagacgctttttaagaatagatatatcca 77
Query: 61 tattt-ggcaaatttga 76
||||| |||||||||||
Sbjct: 78 tatttgggcaaatttga 94
>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
sylvaticum
Length = 124
Score = 105 bits (53), Expect = 8e-23
Identities = 72/77 (93%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 cctaaattgttgtcgaaatattagatgtatctagacgctttttaaaaatagatacatcca 60
|||||||| |||||||||||||| |||||||||||||| |||||| ||||||||||||||
Sbjct: 18 cctaaattattgtcgaaatattacatgtatctagacgcgttttaagaatagatacatcca 77
Query: 61 tattt-ggcaaatttga 76
||||| |||||||||||
Sbjct: 78 tatttgggcaaatttga 94
>RF00906;MIR1122;EU730902.1/55282-55158 15368:Brachypodium
distachyon
Length = 125
Score = 85.7 bits (43), Expect = 7e-17
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 11 tgtcgaaatattagatgtatctagacgctttttaaaaatagatacatccatatttg-gca 69
||||||||||||| |||||||||||||| ||||| |||||||||||||||| |||| |||
Sbjct: 98 tgtcgaaatattacatgtatctagacgcattttagaaatagatacatccatctttgagca 39
Query: 70 aatttga 76
|||||||
Sbjct: 38 aatttga 32
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 81.8 bits (41), Expect = 1e-15
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 5 aattgttgtcgaaatattagatgtatctagacgctttttaaaaatagatacatcc-atat 63
|||| |||||||||||||| |||||||||||||||||||| ||||||||||||| || |
Sbjct: 22 aattcttgtcgaaatattacatgtatctagacgctttttaggaatagatacatccaattt 81
Query: 64 ttggcaaatttga 76
| |||||||||||
Sbjct: 82 tgggcaaatttga 94
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 81.8 bits (41), Expect = 1e-15
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Minus
Query: 9 gttgtcgaaatattagatgtatctagacgctttttaaaaatagatacatccatat-ttgg 67
||||||||||||||| |||||||||||||||||||| |||||||||||||||| | ||
Sbjct: 100 gttgtcgaaatattacatgtatctagacgctttttaggcatagatacatccatatctggg 41
Query: 68 caaatttga 76
|||||||||
Sbjct: 40 caaatttga 32
>RF00906;MIR1122;EF059989.1/52700-52824 29664:Brachypodium
sylvaticum
Length = 125
Score = 79.8 bits (40), Expect = 5e-15
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 10 ttgtcgaaatattagatgtatctagacgctttttaaaaatagatacatccatattt-ggc 68
|||||||||||||| |||||||||||||||||||||| |||||| ||| | ||||| |||
Sbjct: 27 ttgtcgaaatattacatgtatctagacgctttttaaacatagatgcattcgtatttgggc 86
Query: 69 aaatttga 76
||||||||
Sbjct: 87 aaatttga 94
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 77.8 bits (39), Expect = 2e-14
Identities = 55/59 (93%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 19 tattagatgtatctagacgctttttaaaaatagatacatccatatttgg-caaatttga 76
||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 90 tattacatgtatctagacgctttttaagcatagatacatccatatttggacaaatttga 32
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 77.8 bits (39), Expect = 2e-14
Identities = 61/67 (91%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 11 tgtcgaaatattagatgtatctagacgctttttaaaaatagatacatccatattt-ggca 69
||||||||||||| ||||||||||| |||||||| |||||||||||||||||| ||||
Sbjct: 97 tgtcgaaatattacatgtatctagatgctttttaggtatagatacatccatatttgggca 38
Query: 70 aatttga 76
|||||||
Sbjct: 37 aatttga 31
>RF00906;MIR1122;EU730898.1/54746-54622 15368:Brachypodium
distachyon
Length = 125
Score = 73.8 bits (37), Expect = 3e-13
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Minus
Query: 5 aattgttgtcgaaatattagatgtatctagacgctttttaaaaatagatacatccatatt 64
|||| ||||| |||||||| |||||||||||| ||||||| ||||||||||||| || ||
Sbjct: 104 aattcttgtcaaaatattacatgtatctagacactttttagaaatagatacatctatttt 45
Query: 65 tg-gcaaatttga 76
|| ||||||||||
Sbjct: 44 tgagcaaatttga 32
>RF00906;MIR1122;EF059989.1/156495-156619 29664:Brachypodium
sylvaticum
Length = 125
Score = 71.9 bits (36), Expect = 1e-12
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 10 ttgtcgaaatattagatgtatctagacgctttttaaaaatagatacatccatatttgg-c 68
|||||||||||||| |||||||||||| ||||||| | |||||||||| | ||||||| |
Sbjct: 27 ttgtcgaaatattacatgtatctagactctttttacacatagatacattcgtatttggac 86
Query: 69 aaatttga 76
||||||||
Sbjct: 87 aaatttga 94
>RF00906;MIR1122;EU730894.1/121201-121325 15368:Brachypodium
distachyon
Length = 125
Score = 69.9 bits (35), Expect = 4e-12
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 10 ttgtcgaaatattagatgtatctagacgctttttaaaaatagatacatccat-atttggc 68
|||||||||||||| ||||||||||| |||||||||| || || |||||||| ||| |||
Sbjct: 99 ttgtcgaaatattacatgtatctagatgctttttaaacattgacacatccataattgggc 40
Query: 69 aaatttg 75
|||||||
Sbjct: 39 aaatttg 33
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 69.9 bits (35), Expect = 4e-12
Identities = 54/59 (91%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 19 tattagatgtatctagacgctttttaaaaatagatacatccatatttgg-caaatttga 76
||||| |||||||||||| ||||||| | |||||||||||||||||||| |||||||||
Sbjct: 36 tattacatgtatctagacactttttagacatagatacatccatatttggacaaatttga 94
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 67.9 bits (34), Expect = 2e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 10 ttgtcgaaatattagatgtatctagacgctttttaaaaatagatacatccatatttgg 67
||||| |||||||| ||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 27 ttgtcaaaatattacatgtatctaaacgctttttaggcatagatacatccatatttgg 84
>RF00906;MIR1122;EU730901.1/108914-109038 15368:Brachypodium
distachyon
Length = 125
Score = 67.9 bits (34), Expect = 2e-11
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 5 aattgttgtcgaaatattagatgtatctagacgctttttaaaaatagatacatccatatt 64
|||| |||||||||| ||| |||||||||||| ||||||| ||||||||||||||| ||
Sbjct: 104 aattcttgtcgaaatcttacatgtatctagacactttttatgaatagatacatccatttt 45
Query: 65 tg 66
||
Sbjct: 44 tg 43
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 67.9 bits (34), Expect = 2e-11
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 10 ttgtcgaaatattagatgtatctagacgctttttaaaaatagatacatccatatttgg 67
||||| |||||||| ||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 89 ttgtcaaaatattacatgtatctagacgttttttatgcatagatacatccatatttgg 32
>RF00906;MIR1122;EU730895.1/40339-40463 15368:Brachypodium
distachyon
Length = 125
Score = 65.9 bits (33), Expect = 7e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 10 ttgtcgaaatattagatgtatctagacgctttttaaaaatagatacatccatatttg 66
|||||||||||||| || ||||||| | ||||||||| |||||||||| ||||||||
Sbjct: 27 ttgtcgaaatattacatttatctagtcactttttaaacatagatacattcatatttg 83
>RF00906;MIR1122;EF059989.1/54267-54145 29664:Brachypodium
sylvaticum
Length = 123
Score = 65.9 bits (33), Expect = 7e-11
Identities = 58/65 (89%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 12 gtcgaaatattagatgtatctagacgctttttaaaaatagatacatccatatttggcaaa 71
|||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||| |||
Sbjct: 95 gtcgaaatattacatgtatctagatatttttttaaaatagatacatccatttttgg-aaa 37
Query: 72 tttga 76
|||||
Sbjct: 36 tttga 32
>RF00906;MIR1122;EU730899.1/90906-91030 15368:Brachypodium
distachyon
Length = 125
Score = 65.9 bits (33), Expect = 7e-11
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 5 aattgttgtcgaaatattagatgtatctagacgctttttaaaaatagatacatccatatt 64
|||| |||| ||||||||| |||||||||||| ||||||| ||||||||||| ||| ||
Sbjct: 22 aattcttgttgaaatattacatgtatctagacactttttaggaatagatacattcatttt 81
Query: 65 tgg-caaatttga 76
||| |||||||||
Sbjct: 82 tggtcaaatttga 94
>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
distachyon
Length = 125
Score = 65.9 bits (33), Expect = 7e-11
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Minus
Query: 5 aattgttgtcgaaatattagatgtatctagacgctttttaaaaatagatacatccatatt 64
|||| ||||||||||||| ||||||||| |||| ||||| ||||||||||||||| ||
Sbjct: 104 aattcttgtcgaaatattgcatgtatctaaacgccttttaggaatagatacatccatttt 45
Query: 65 t-ggcaaatttga 76
| |||||||||||
Sbjct: 44 tgggcaaatttga 32
>RF00906;MIR1122;EU730902.1/30283-30160 15368:Brachypodium
distachyon
Length = 124
Score = 63.9 bits (32), Expect = 3e-10
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 5 aattgttgtcgaaatattagatgtatctagacgctttttaaaaatagatacatccatatt 64
|||| |||||||||||| ||||| ||||| |||||||||| |||||| |||||| | ||
Sbjct: 103 aattcttgtcgaaatatcagatgcatctaaacgctttttagaaatagctacatcattttt 44
Query: 65 tggcaaatttga 76
|||||||||||
Sbjct: 43 gggcaaatttga 32
>RF00906;MIR1122;EU730901.1/65072-65195 15368:Brachypodium
distachyon
Length = 124
Score = 63.9 bits (32), Expect = 3e-10
Identities = 61/68 (89%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 10 ttgtcgaaatattagatgtatctagacgctttttaaaaatagatacatccatattt-ggc 68
|||||||||||||| ||||||||||||| |||||| | |||||||||||| |||| |||
Sbjct: 27 ttgtcgaaatattatatgtatctagacg-tttttacacatagatacatccgcatttgggc 85
Query: 69 aaatttga 76
||||||||
Sbjct: 86 aaatttga 93
>RF00906;MIR1122;EU730894.1/127135-127259 15368:Brachypodium
distachyon
Length = 125
Score = 63.9 bits (32), Expect = 3e-10
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 10 ttgtcgaaatattagatgtatctagacgctttttaaaaatagatacatccatattt-ggc 68
|||||||||||||| |||||||||||| ||||||| | ||||||||| | ||||| |||
Sbjct: 27 ttgtcgaaatattacatgtatctagacactttttacacgtagatacattcgtatttgggc 86
Query: 69 aaatttga 76
||||||||
Sbjct: 87 aaatttga 94
>RF00906;MIR1122;EF059989.1/67137-67261 29664:Brachypodium
sylvaticum
Length = 125
Score = 61.9 bits (31), Expect = 1e-09
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 13 tcgaaatattagatgtatctagacgctttttaaaaatagatacatccatatttgg 67
||||||||||| ||||||||| |||||||||| ||| ||||||||||||||||
Sbjct: 96 tcgaaatattacatgtatctaaacgctttttacgcatatatacatccatatttgg 42
>RF00906;MIR1122;EF059989.1/222260-222384 29664:Brachypodium
sylvaticum
Length = 125
Score = 61.9 bits (31), Expect = 1e-09
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 5 aattgttgtcgaaatattagatgtatctagacgctttttaaaaatagatacatccatatt 64
|||| |||||||||| ||| ||||||||||||| |||||| |||| |||||||||| ||
Sbjct: 104 aattcttgtcgaaatcttacatgtatctagacgttttttatgaatatatacatccatttt 45
Query: 65 tgg 67
|||
Sbjct: 44 tgg 42
>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
distachyon
Length = 127
Score = 60.0 bits (30), Expect = 4e-09
Identities = 57/65 (87%), Gaps = 2/65 (3%)
Strand = Plus / Minus
Query: 5 aattgttgtcgaaatattagatgtatctagac--gctttttaaaaatagatacatccata 62
|||| |||||||||||||| |||||||||||| | |||||| |||||||||||||||
Sbjct: 106 aattcttgtcgaaatattacatgtatctagacgtgttttttaggaatagatacatccatt 47
Query: 63 tttgg 67
|||||
Sbjct: 46 tttgg 42
>RF00906;MIR1122;EU730898.1/63863-63739 15368:Brachypodium
distachyon
Length = 125
Score = 58.0 bits (29), Expect = 2e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 5 aattgttgtcgaaatattagatgtatctagacgctttttaaaaatagatacat 57
|||| ||||||||| |||| ||||||||||||||||||| |||||||||||
Sbjct: 22 aattcttgtcgaaacattacgtgtatctagacgctttttagtaatagatacat 74
>RF00906;MIR1122;EF059989.1/74343-74464 29664:Brachypodium
sylvaticum
Length = 122
Score = 54.0 bits (27), Expect = 3e-07
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 11 tgtcgaaatattagatgtatctagacgctttttaaaaatagatacatccat 61
|||| ||| |||| ||||||||||||| ||||||| ||||||||||||||
Sbjct: 95 tgtcaaaacattacatgtatctagacgttttttaactatagatacatccat 45
>RF00906;MIR1122;EF059989.1/159537-159414 29664:Brachypodium
sylvaticum
Length = 124
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 14 cgaaatattagatgtatctagacgcttttt 43
|||||||||| |||||||||||||||||||
Sbjct: 94 cgaaatattacatgtatctagacgcttttt 65
>RF00906;MIR1122;EU730899.1/99199-99323 15368:Brachypodium
distachyon
Length = 125
Score = 50.1 bits (25), Expect = 4e-06
Identities = 62/73 (84%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 5 aattgttgtcgaaatattagatgtatctagacgctttttaaaaatagatacatccatatt 64
|||| |||||||||||||| |||||||||||| | | | ||||||||||||||| ||
Sbjct: 22 aattcttgtcgaaatattacatgtatctagacacctcgaaggaatagatacatccatttt 81
Query: 65 t-ggcaaatttga 76
| |||||||||||
Sbjct: 82 tgggcaaatttga 94
>RF00906;MIR1122;EF059989.1/223398-223521 29664:Brachypodium
sylvaticum
Length = 124
Score = 44.1 bits (22), Expect = 3e-04
Identities = 50/58 (86%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 10 ttgtcgaaatattagatgtatctagacgctttttaaaaatagatacatccatatttgg 67
|||||||||||||| ||||||| |||| ||||||| ||| ||||||| ||||||||
Sbjct: 98 ttgtcgaaatattacatgtatccagac-ctttttaggtataaatacatctatatttgg 42
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 13 tcgaaatattagatgtatctagacg 37
||||||||||| |||||||||||||
Sbjct: 30 tcgaaatattacatgtatctagacg 54
