miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF059989.1/55128-55252 29664:Brachypodium
sylvaticum
Length = 125
Score = 129 bits (65), Expect = 5e-30
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 1 ctaaattgttgttgaaatattacatgtatctagacgctttttaagaatagatacatccat 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 19 ctaaattgttgtcgaaatattacatgtatctagacgctttttaagaatagatatatccat 78
Query: 61 atttgggcaaacttgag 77
||||||||||| |||||
Sbjct: 79 atttgggcaaatttgag 95
>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
sylvaticum
Length = 124
Score = 121 bits (61), Expect = 1e-27
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 1 ctaaattgttgttgaaatattacatgtatctagacgctttttaagaatagatacatccat 60
||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 19 ctaaattattgtcgaaatattacatgtatctagacgcgttttaagaatagatacatccat 78
Query: 61 atttgggcaaacttgag 77
||||||||||| |||||
Sbjct: 79 atttgggcaaatttgag 95
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 99.6 bits (50), Expect = 5e-21
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 4 aattgttgttgaaatattacatgtatctagacgctttttaagaatagatacatccatatt 63
|||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 22 aattcttgtcgaaatattacatgtatctagacgctttttaggaatagatacatccaattt 81
Query: 64 tgggcaaacttgag 77
|||||||| |||||
Sbjct: 82 tgggcaaatttgag 95
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 99.6 bits (50), Expect = 5e-21
Identities = 65/70 (92%)
Strand = Plus / Minus
Query: 8 gttgttgaaatattacatgtatctagacgctttttaagaatagatacatccatatttggg 67
||||| |||||||||||||||||||||||||||||| | |||||||||||||||| ||||
Sbjct: 100 gttgtcgaaatattacatgtatctagacgctttttaggcatagatacatccatatctggg 41
Query: 68 caaacttgag 77
|||| |||||
Sbjct: 40 caaatttgag 31
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 95.6 bits (48), Expect = 8e-20
Identities = 57/60 (95%)
Strand = Plus / Minus
Query: 18 tattacatgtatctagacgctttttaagaatagatacatccatatttgggcaaacttgag 77
|||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||
Sbjct: 90 tattacatgtatctagacgctttttaagcatagatacatccatatttggacaaatttgag 31
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 95.6 bits (48), Expect = 8e-20
Identities = 60/64 (93%)
Strand = Plus / Minus
Query: 14 gaaatattacatgtatctagacgctttttaagaatagatacatccatatttgggcaaact 73
||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| |
Sbjct: 93 gaaatattacatgtatctagatgctttttaggtatagatacatccatatttgggcaaatt 34
Query: 74 tgag 77
||||
Sbjct: 33 tgag 30
>RF00906;MIR1122;EU730899.1/90906-91030 15368:Brachypodium
distachyon
Length = 125
Score = 91.7 bits (46), Expect = 1e-18
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 4 aattgttgttgaaatattacatgtatctagacgctttttaagaatagatacatccatatt 63
|||| ||||||||||||||||||||||||||| ||||||| |||||||||||| ||| ||
Sbjct: 22 aattcttgttgaaatattacatgtatctagacactttttaggaatagatacattcatttt 81
Query: 64 tgggcaaacttgag 77
||| |||| |||||
Sbjct: 82 tggtcaaatttgag 95
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 85.7 bits (43), Expect = 7e-17
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 15 aaatattacatgtatctagacgctttttaagaatagatacatccatatttgggcaaactt 74
|||||||||||||||||| |||||||||| | ||||||||||||||||||||| ||| ||
Sbjct: 33 aaatattacatgtatctaaacgctttttaggcatagatacatccatatttgggaaaattt 92
Query: 75 gag 77
|||
Sbjct: 93 gag 95
>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
distachyon
Length = 125
Score = 83.8 bits (42), Expect = 3e-16
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 4 aattgttgttgaaatattacatgtatctagacgctttttaagaatagatacatccatatt 63
|||| |||| |||||||| |||||||||| |||| ||||| |||||||||||||||| ||
Sbjct: 104 aattcttgtcgaaatattgcatgtatctaaacgccttttaggaatagatacatccatttt 45
Query: 64 tgggcaaacttgag 77
|||||||| |||||
Sbjct: 44 tgggcaaatttgag 31
>RF00906;MIR1122;EF059989.1/67137-67261 29664:Brachypodium
sylvaticum
Length = 125
Score = 81.8 bits (41), Expect = 1e-15
Identities = 53/57 (92%)
Strand = Plus / Minus
Query: 14 gaaatattacatgtatctagacgctttttaagaatagatacatccatatttgggcaa 70
||||||||||||||||||| |||||||||| | ||| ||||||||||||||||||||
Sbjct: 94 gaaatattacatgtatctaaacgctttttacgcatatatacatccatatttgggcaa 38
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 81.8 bits (41), Expect = 1e-15
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 15 aaatattacatgtatctagacgctttttaagaatagatacatccatatttggg 67
|||||||||||||||||||||| |||||| | |||||||||||||||||||||
Sbjct: 83 aaatattacatgtatctagacgttttttatgcatagatacatccatatttggg 31
>RF00906;MIR1122;EF059989.1/52700-52824 29664:Brachypodium
sylvaticum
Length = 125
Score = 81.8 bits (41), Expect = 1e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 9 ttgttgaaatattacatgtatctagacgctttttaagaatagatacatccatatttgggc 68
|||| ||||||||||||||||||||||||||||||| |||||| ||| | |||||||||
Sbjct: 27 ttgtcgaaatattacatgtatctagacgctttttaaacatagatgcattcgtatttgggc 86
Query: 69 aaacttgag 77
||| |||||
Sbjct: 87 aaatttgag 95
>RF00906;MIR1122;EU730902.1/55282-55158 15368:Brachypodium
distachyon
Length = 125
Score = 79.8 bits (40), Expect = 4e-15
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 14 gaaatattacatgtatctagacgctttttaagaatagatacatccatatttgggcaaact 73
|||||||||||||||||||||||| ||||| ||||||||||||||| |||| ||||| |
Sbjct: 94 gaaatattacatgtatctagacgcattttagaaatagatacatccatctttgagcaaatt 35
Query: 74 tgag 77
||||
Sbjct: 34 tgag 31
>RF00906;MIR1122;EU730901.1/108914-109038 15368:Brachypodium
distachyon
Length = 125
Score = 77.8 bits (39), Expect = 2e-14
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 4 aattgttgttgaaatattacatgtatctagacgctttttaagaatagatacatccatatt 63
|||| |||| ||||| |||||||||||||||| ||||||| |||||||||||||||| ||
Sbjct: 104 aattcttgtcgaaatcttacatgtatctagacactttttatgaatagatacatccatttt 45
Query: 64 tgggcaa 70
|| ||||
Sbjct: 44 tgagcaa 38
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 71.9 bits (36), Expect = 1e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 18 tattacatgtatctagacgctttttaagaatagatacatccatatttgggcaaacttgag 77
|||||||||||||||||| ||||||| |||||||||||||||||||| |||| |||||
Sbjct: 36 tattacatgtatctagacactttttagacatagatacatccatatttggacaaatttgag 95
>RF00906;MIR1122;EF059989.1/222260-222384 29664:Brachypodium
sylvaticum
Length = 125
Score = 71.9 bits (36), Expect = 1e-12
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 4 aattgttgttgaaatattacatgtatctagacgctttttaagaatagatacatccatatt 63
|||| |||| ||||| ||||||||||||||||| |||||| ||||| |||||||||| ||
Sbjct: 104 aattcttgtcgaaatcttacatgtatctagacgttttttatgaatatatacatccatttt 45
Query: 64 tgggcaaa 71
||| ||||
Sbjct: 44 tggacaaa 37
>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
distachyon
Length = 127
Score = 69.9 bits (35), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 4 aattgttgttgaaatattacatgtatctagac--gctttttaagaatagatacatccata 61
|||| |||| |||||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct: 106 aattcttgtcgaaatattacatgtatctagacgtgttttttaggaatagatacatccatt 47
Query: 62 tttggg 67
||||||
Sbjct: 46 tttggg 41
>RF00906;MIR1122;EU730894.1/121201-121325 15368:Brachypodium
distachyon
Length = 125
Score = 69.9 bits (35), Expect = 4e-12
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 9 ttgttgaaatattacatgtatctagacgctttttaagaatagatacatccatatttgggc 68
|||| ||||||||||||||||||||| ||||||||| || || ||||||||| ||||||
Sbjct: 99 ttgtcgaaatattacatgtatctagatgctttttaaacattgacacatccataattgggc 40
Query: 69 aaa 71
|||
Sbjct: 39 aaa 37
>RF00906;MIR1122;EU730898.1/54746-54622 15368:Brachypodium
distachyon
Length = 125
Score = 69.9 bits (35), Expect = 4e-12
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 15 aaatattacatgtatctagacgctttttaagaatagatacatccatatttgggcaaactt 74
||||||||||||||||||||| ||||||| |||||||||||| || |||| ||||| ||
Sbjct: 93 aaatattacatgtatctagacactttttagaaatagatacatctatttttgagcaaattt 34
Query: 75 gag 77
|||
Sbjct: 33 gag 31
>RF00906;MIR1122;EU730899.1/99199-99323 15368:Brachypodium
distachyon
Length = 125
Score = 67.9 bits (34), Expect = 2e-11
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 4 aattgttgttgaaatattacatgtatctagacgctttttaagaatagatacatccatatt 63
|||| |||| |||||||||||||||||||||| | | | |||||||||||||||| ||
Sbjct: 22 aattcttgtcgaaatattacatgtatctagacacctcgaaggaatagatacatccatttt 81
Query: 64 tgggcaaacttgag 77
|||||||| |||||
Sbjct: 82 tgggcaaatttgag 95
>RF00906;MIR1122;EU730898.1/63863-63739 15368:Brachypodium
distachyon
Length = 125
Score = 67.9 bits (34), Expect = 2e-11
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 4 aattgttgttgaaatattacatgtatctagacgctttttaagaatagatacatccatatt 63
|||| |||| |||| ||||| ||||||||||||||||||| ||||||||||| || ||
Sbjct: 22 aattcttgtcgaaacattacgtgtatctagacgctttttagtaatagatacattcaattt 81
Query: 64 tgggcaaacttgag 77
|||||||| |||||
Sbjct: 82 tgggcaaatttgag 95
>RF00906;MIR1122;EU730894.1/127135-127259 15368:Brachypodium
distachyon
Length = 125
Score = 65.9 bits (33), Expect = 7e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 9 ttgttgaaatattacatgtatctagacgctttttaagaatagatacatccatatttgggc 68
|||| |||||||||||||||||||||| ||||||| ||||||||| | |||||||||
Sbjct: 27 ttgtcgaaatattacatgtatctagacactttttacacgtagatacattcgtatttgggc 86
Query: 69 aaacttgag 77
||| |||||
Sbjct: 87 aaatttgag 95
>RF00906;MIR1122;EF059989.1/156495-156619 29664:Brachypodium
sylvaticum
Length = 125
Score = 65.9 bits (33), Expect = 7e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 9 ttgttgaaatattacatgtatctagacgctttttaagaatagatacatccatatttgggc 68
|||| |||||||||||||||||||||| ||||||| |||||||||| | ||||||| |
Sbjct: 27 ttgtcgaaatattacatgtatctagactctttttacacatagatacattcgtatttggac 86
Query: 69 aaacttgag 77
||| |||||
Sbjct: 87 aaatttgag 95
>RF00906;MIR1122;EF059989.1/74343-74464 29664:Brachypodium
sylvaticum
Length = 122
Score = 60.0 bits (30), Expect = 4e-09
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 19 attacatgtatctagacgctttttaagaatagatacatccat 60
|||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 86 attacatgtatctagacgttttttaactatagatacatccat 45
>RF00906;MIR1122;EU730901.1/65072-65195 15368:Brachypodium
distachyon
Length = 124
Score = 58.0 bits (29), Expect = 2e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 9 ttgttgaaatattacatgtatctagacgctttttaagaatagatacatccatatttgggc 68
|||| ||||||||| ||||||||||||| |||||| |||||||||||| ||||||||
Sbjct: 27 ttgtcgaaatattatatgtatctagacg-tttttacacatagatacatccgcatttgggc 85
Query: 69 aaacttgag 77
||| |||||
Sbjct: 86 aaatttgag 94
>RF00906;MIR1122;EU730895.1/40339-40463 15368:Brachypodium
distachyon
Length = 125
Score = 58.0 bits (29), Expect = 2e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 9 ttgttgaaatattacatgtatctagacgctttttaagaatagatacatccatatttg 65
|||| |||||||||||| ||||||| | |||||||| |||||||||| ||||||||
Sbjct: 27 ttgtcgaaatattacatttatctagtcactttttaaacatagatacattcatatttg 83
>RF00906;MIR1122;EF059989.1/54267-54145 29664:Brachypodium
sylvaticum
Length = 123
Score = 58.0 bits (29), Expect = 2e-08
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 14 gaaatattacatgtatctagacgctttttaagaatagatacatccatatttgg 66
||||||||||||||||||||| ||||| | ||||||||||||||| |||||
Sbjct: 92 gaaatattacatgtatctagatatttttttaaaatagatacatccatttttgg 40
>RF00906;MIR1122;EF059989.1/159537-159414 29664:Brachypodium
sylvaticum
Length = 124
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 14 gaaatattacatgtatctagacgcttttt 42
|||||||||||||||||||||||||||||
Sbjct: 93 gaaatattacatgtatctagacgcttttt 65
>RF00906;MIR1122;EF059989.1/365637-365513 29664:Brachypodium
sylvaticum
Length = 125
Score = 56.0 bits (28), Expect = 6e-08
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 18 tattacatgtatctagacgctttttaagaatagatacatccatatttg 65
||||||||| |||||||| |||||| | |||||||||||||||||||
Sbjct: 90 tattacatgcatctagacattttttaggcatagatacatccatatttg 43
>RF00906;MIR1122;EF059989.1/223398-223521 29664:Brachypodium
sylvaticum
Length = 124
Score = 54.0 bits (27), Expect = 3e-07
Identities = 55/63 (87%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 9 ttgttgaaatattacatgtatctagacgctttttaagaatagatacatccatatttgggc 68
|||| ||||||||||||||||| |||| ||||||| | ||| ||||||| |||||||| |
Sbjct: 98 ttgtcgaaatattacatgtatccagac-ctttttaggtataaatacatctatatttggac 40
Query: 69 aaa 71
|||
Sbjct: 39 aaa 37
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 gaaatattacatgtatctagacg 36
|||||||||||||||||||||||
Sbjct: 32 gaaatattacatgtatctagacg 54
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 42.1 bits (21), Expect = 0.001
Identities = 52/61 (85%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 18 tattacatgtatctagacgctttttaaga-atagatacatccatatttgggcaaacttga 76
||||||||||||||||||| ||| || | |||||||| ||||||||| | |||| ||||
Sbjct: 36 tattacatgtatctagacgttttctagtatatagatacgtccatatttagacaaatttga 95
Query: 77 g 77
|
Sbjct: 96 g 96
