miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730901.1/155966-155873 15368:Brachypodium
distachyon
Length = 94
Score = 133 bits (67), Expect = 5e-31
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 13 gtacttcctccgttcctaaatacttgtcgctattttagtgcaaacttgtactaaaacagc 72
||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 4 gtactccctccgttcctaaatacttgtcgttgttttagtgcaaacttgtactaaaacagg 63
Query: 73 gacaagtatttaggaacggagggagta 99
||||||||||||| |||||||||||||
Sbjct: 64 gacaagtatttagaaacggagggagta 90
Score = 101 bits (51), Expect = 2e-21
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 13 gtacttcctccgttcctaaatacttgtcgctattttagtgcaaacttgtactaaaacagc 72
||||| |||||||| ||||||||||||| || ||||||| ||| ||| ||||||||| |
Sbjct: 91 gtactccctccgtttctaaatacttgtccctgttttagtacaagtttgcactaaaacaac 32
Query: 73 gacaagtatttaggaacggagggagta 99
|||||||||||||||||||||||||||
Sbjct: 31 gacaagtatttaggaacggagggagta 5
>RF00906;MIR1122;EU730896.1/84586-84679 15368:Brachypodium
distachyon
Length = 94
Score = 131 bits (66), Expect = 2e-30
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 14 tacttcctccgttcctaaatacttgtcgctattttagtgcaaacttgtactaaaacagcg 73
|||| |||||||| |||||||||||||| | || ||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtttctaaatacttgtcgttgttctagtgcaaacttgtactaaaacagcg 64
Query: 74 acaagtatttaggaacggagggagta 99
||||||||||||||||||||||||||
Sbjct: 65 acaagtatttaggaacggagggagta 90
Score = 103 bits (52), Expect = 5e-22
Identities = 79/88 (89%)
Strand = Plus / Minus
Query: 14 tacttcctccgttcctaaatacttgtcgctattttagtgcaaacttgtactaaaacagcg 73
|||| ||||||||||||||||||||||||| ||||||| ||| ||| |||| |||| ||
Sbjct: 90 tactccctccgttcctaaatacttgtcgctgttttagtacaagtttgcactagaacaacg 31
Query: 74 acaagtatttaggaacggagggagtatt 101
|||||||||||| |||||||||||||||
Sbjct: 30 acaagtatttagaaacggagggagtatt 3
>RF00906;MIR1122;EU730899.1/47735-47828 15368:Brachypodium
distachyon
Length = 94
Score = 97.6 bits (49), Expect = 3e-20
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 28 ctaaatacttgtcgctattttagtgcaaacttgtactaaaacagcgacaagtatttagga 87
||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 19 ctaaatacttgtcatgattttagtgcaaagttgtactaaaaccacgacaagtatttagga 78
Query: 88 acggagggagtat 100
|||||||||||||
Sbjct: 79 acggagggagtat 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 14 tacttcctccgttcctaaatacttgtcg 41
|||| |||||||||||||||||||||||
Sbjct: 90 tactccctccgttcctaaatacttgtcg 63
>RF00906;MIR1122;EU730897.1/19348-19255 15368:Brachypodium
distachyon
Length = 94
Score = 77.8 bits (39), Expect = 3e-14
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 19 cctccgttcctaaatacttgtcgctattttagtgcaaacttgtactaaaacagcgacaag 78
|||||||| |||||| | ||||| | ||||||| |||||||| |||||||||||||||||
Sbjct: 10 cctccgtttctaaattcctgtcgttgttttagtccaaacttgcactaaaacagcgacaag 69
Query: 79 tatttaggaacggag 93
|||||| |||||||
Sbjct: 70 aatttagaaacggag 84
Score = 75.8 bits (38), Expect = 1e-13
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 20 ctccgttcctaaatacttgtcgctattttagtgcaaacttgtactaaaacagcgacaagt 79
||||||| |||||| ||||||||| ||||||||||| ||| ||||||||| ||||| |
Sbjct: 84 ctccgtttctaaattcttgtcgctgttttagtgcaagtttggactaaaacaacgacagga 25
Query: 80 atttaggaacggagggag 97
|||||| |||||||||||
Sbjct: 24 atttagaaacggagggag 7
>RF00906;MIR1122;EU730902.1/79802-79895 15368:Brachypodium
distachyon
Length = 94
Score = 61.9 bits (31), Expect = 2e-09
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 45 ttttagtgcaaacttgtactaaaacagcgacaagtatttaggaacggagggagta 99
||||||| |||| ||| ||||||||| ||||||| |||||||| |||||||||||
Sbjct: 59 ttttagttcaaaattgcactaaaacaacgacaagaatttaggatcggagggagta 5
Score = 60.0 bits (30), Expect = 6e-09
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 11 aggtacttcctccgttcctaaatacttgtcgctattttagtgcaaacttgtactaaaaca 70
||||||| |||||| |||||||| ||||||| | ||||||||||| ||| |||||||||
Sbjct: 2 aggtactccctccgatcctaaattcttgtcgttgttttagtgcaattttgaactaaaaca 61
Query: 71 gcgacaagtatttaggaacggaggga 96
||||| ||||||| ||||||||
Sbjct: 62 aggacaataatttagggtcggaggga 87
>RF00906;MIR1122;EU660899.1/111846-111744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 103
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 53 caaacttgtactaaaacagcgacaagtatttaggaacggagggagtat 100
|||| ||| |||||||| |||||||||||| ||||||||||||||||
Sbjct: 51 caaatttgaactaaaaccacgacaagtattttggaacggagggagtat 4
>RF00906;MIR1122;DQ537335.1/79725-79622 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 73 gacaagtatttaggaacggagggagta 99
|||||||||||||||||||||||||||
Sbjct: 74 gacaagtatttaggaacggagggagta 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 13 gtacttcctccgttcctaaatacttgtc 40
||||| ||||||||||||||||||||||
Sbjct: 101 gtactccctccgttcctaaatacttgtc 74
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 72 cgacaagtatttaggaacggagggagtattt 102
|||||||||||| || |||||||||||||||
Sbjct: 32 cgacaagtattttgggacggagggagtattt 2
>RF00906;MIR1122;AJ300144.1/1569-1477 4513:Hordeum vulgare
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 74 acaagtatttaggaacggagggagtat 100
|||||||||||||||| ||||||||||
Sbjct: 64 acaagtatttaggaacagagggagtat 90
>RF01058;MIR806;AP008208.1/25882787-25882549 39947:Oryza sativa
Japonica Group
Length = 239
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 tatttaggaacggagggagtat 100
||||||||||||||||||||||
Sbjct: 218 tatttaggaacggagggagtat 239
>RF01058;MIR806;AP008218.1/4987696-4987454 39947:Oryza sativa
Japonica Group
Length = 243
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 71 gcgacaagtatttaggaacggagggagtat 100
||||||| ||||||| ||||||||||||||
Sbjct: 30 gcgacaaatatttagaaacggagggagtat 1
>RF01058;MIR806;AP008216.1/10730007-10730247 39947:Oryza sativa
Japonica Group
Length = 241
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 67 aacagcgacaagtatttaggaacggagggagtat 100
||||||| ||| |||||||| |||||||||||||
Sbjct: 208 aacagcgtcaaatatttagggacggagggagtat 241
>RF01058;MIR806;AACV01015094.1/17201-16961 39947:Oryza sativa
Japonica Group
Length = 241
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 13 gtacttcctccgttcctaaatacttgtcgctatt 46
||||| |||||||||||||||| ||| |||||||
Sbjct: 241 gtactccctccgttcctaaatatttgacgctatt 208
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 70 agcgacaagtatttaggaacggagggagta 99
|||| ||| |||||||||||||||||||||
Sbjct: 211 agcgtcaaatatttaggaacggagggagta 240
>RF01058;MIR806;AP005509.3/89630-89392 39947:Oryza sativa Japonica
Group
Length = 239
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 67 aacagcgacaagtatttaggaacggagggagtat 100
||||||| ||| ||||||| ||||||||||||||
Sbjct: 34 aacagcgtcaaatatttagaaacggagggagtat 1
>RF01058;MIR806;AAAA02031083.1/47175-47411 39946:Oryza sativa Indica
Group
Length = 237
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 67 aacagcgacaagtatttaggaacggagggagtat 100
||||||| |||||||||||| | |||||||||||
Sbjct: 204 aacagcgtcaagtatttagggaaggagggagtat 237
>RF01058;MIR806;AP008209.1/22697310-22697556 39947:Oryza sativa
Japonica Group
Length = 247
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 79 tatttaggaacggagggagtat 100
||||||||||||||||||||||
Sbjct: 22 tatttaggaacggagggagtat 1
>RF01058;MIR806;AC093089.1/88728-88954 39947:Oryza sativa Japonica
Group
Length = 227
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 67 aacagcgacaagtatttaggaacggagggagtat 100
||||||| ||| ||||||| ||||||||||||||
Sbjct: 34 aacagcgtcaaatatttagaaacggagggagtat 1
>RF00906;MIR1122;AY963808.1/8398-8494 4565:Triticum aestivum
(bread wheat)
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 69/84 (82%), Gaps = 3/84 (3%)
Strand = Plus / Minus
Query: 19 cctccgttcctaaatacttgtcgctattttagtgcaaacttgta---ctaaaacagcgac 75
|||||||||| | ||||||||||| |||||| |||| ||||| ||||| ||| |||
Sbjct: 88 cctccgttccatattacttgtcgctgatttagtacaaagttgtaatactaaatcagtgac 29
Query: 76 aagtatttaggaacggagggagta 99
||||| | |||||||||||||||
Sbjct: 28 aagtaatatggaacggagggagta 5
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 58 ttgtactaaaacagcgacaagtatttaggaacggaggg 95
|||||||||| |||||||||||| | |||||||||||
Sbjct: 52 ttgtactaaatcagcgacaagtaatatggaacggaggg 89
>RF00906;MIR1122;AJ400714.1/2947-2781 4565:Triticum aestivum (bread
wheat)
Length = 167
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 79 tatttaggaacggagggagtat 100
||||||||||||||||||||||
Sbjct: 22 tatttaggaacggagggagtat 1
>RF00906;MIR1122;EU812563.1/51726-51572 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 155
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 79 tatttaggaacggagggagtat 100
||||||||||||||||||||||
Sbjct: 25 tatttaggaacggagggagtat 4
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 tatttaggaacggagggagtat 100
||||||||||||||||||||||
Sbjct: 131 tatttaggaacggagggagtat 152
>RF00906;MIR1122;AY853252.1/232318-232152 4513:Hordeum vulgare
Length = 167
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 tatttaggaacggagggagtat 100
||||||||||||||||||||||
Sbjct: 146 tatttaggaacggagggagtat 167
>RF00906;MIR1122;AK252971.1/1469-1351 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 79 tatttaggaacggagggagtat 100
||||||||||||||||||||||
Sbjct: 25 tatttaggaacggagggagtat 4
>RF00906;MIR1122;FJ548567.1/3141-3305 4513:Hordeum vulgare
Length = 165
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 80 atttaggaacggagggagtatt 101
||||||||||||||||||||||
Sbjct: 22 atttaggaacggagggagtatt 1
>RF00906;MIR1122;AK248896.1/138-279 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 142
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 tatttaggaacggagggagtat 100
||||||||||||||||||||||
Sbjct: 118 tatttaggaacggagggagtat 139
>RF00906;MIR1122;EU282260.1/1308-1219 97361:Hordeum murinum
Length = 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 74 acaagtatttaggaacggagggagta 99
|||||||||||||||| |||||||||
Sbjct: 30 acaagtatttaggaacagagggagta 5
>RF00906;MIR1122;AY821693.1/1381-1215 58935:Australopyrum velutinum
Length = 167
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 tatttaggaacggagggagtat 100
||||||||||||||||||||||
Sbjct: 146 tatttaggaacggagggagtat 167
>RF00906;MIR1122;AC129718.2/26799-26917 39947:Oryza sativa Japonica
Group
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 79 tatttaggaacggagggagtat 100
||||||||||||||||||||||
Sbjct: 25 tatttaggaacggagggagtat 4
>RF00906;MIR1122;AP008207.1/21121800-21121682 39947:Oryza sativa
Japonica Group
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 tatttaggaacggagggagtat 100
||||||||||||||||||||||
Sbjct: 95 tatttaggaacggagggagtat 116
>RF00906;MIR1122;AAAA02021208.1/38295-38158 39946:Oryza sativa
Indica Group
Length = 138
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 79 tatttaggaacggagggagtat 100
||||||||||||||||||||||
Sbjct: 25 tatttaggaacggagggagtat 4
