miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF059989.1/55128-55252 29664:Brachypodium
sylvaticum
Length = 125
Score = 149 bits (75), Expect = 1e-35
Identities = 108/119 (90%)
Strand = Plus / Plus
Query: 12 agtactccctccgatcctaaattgttgtcaaaatattacgcgtatctaaacactttttaa 71
||||||||||| ||||||||||||||||| ||||||||| ||||||| || ||||||||
Sbjct: 3 agtactccctctgatcctaaattgttgtcgaaatattacatgtatctagacgctttttaa 62
Query: 72 taatagatacattcatatttggacaaatttgagtcaagaatttatgatcagagggagta 130
|||||||| || ||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 63 gaatagatatatccatatttgggcaaatttgagtcaagaatttaggatcagagggagta 121
>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
sylvaticum
Length = 124
Score = 125 bits (63), Expect = 2e-28
Identities = 106/119 (89%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 12 agtactccctccgatcctaaattgttgtcaaaatattacgcgtatctaaacactttttaa 71
||||||||||||||||||||||| ||||| ||||||||| ||||||| || | ||||||
Sbjct: 3 agtactccctccgatcctaaattattgtcgaaatattacatgtatctagacgcgttttaa 62
Query: 72 taatagatacattcatatttggacaaatttgagtcaagaatttatgatcagagggagta 130
||||||||||| ||||||||| |||||||||| |||||||||| |||| |||||||||
Sbjct: 63 gaatagatacatccatatttgggcaaatttgagacaagaattta-gatcggagggagta 120
>RF00906;MIR1122;EU730899.1/90906-91030 15368:Brachypodium
distachyon
Length = 125
Score = 81.8 bits (41), Expect = 2e-15
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 13 gtactccctccgatcctaaattgttgtcaaaatattacgcgtatctaaacactttttaat 72
|||||||||||| | | |||| |||| ||||||||| ||||||| ||||||||||
Sbjct: 4 gtactccctccgtttcataattcttgttgaaatattacatgtatctagacactttttagg 63
Query: 73 aatagatacattcatatttggacaaatttgagtcaagaatt 113
||||||||||||||| ||||| |||||||||| ||||||||
Sbjct: 64 aatagatacattcatttttggtcaaatttgagacaagaatt 104
>RF00906;MIR1122;EU730898.1/63863-63739 15368:Brachypodium
distachyon
Length = 125
Score = 79.8 bits (40), Expect = 9e-15
Identities = 88/104 (84%)
Strand = Plus / Plus
Query: 14 tactccctccgatcctaaattgttgtcaaaatattacgcgtatctaaacactttttaata 73
||||||||||| ||| |||| ||||| ||| |||||| ||||||| || ||||||| ||
Sbjct: 5 tactccctccgttccataattcttgtcgaaacattacgtgtatctagacgctttttagta 64
Query: 74 atagatacattcatatttggacaaatttgagtcaagaatttatg 117
||||||||||||| ||||| |||||||||| ||| || |||||
Sbjct: 65 atagatacattcaattttgggcaaatttgagacaaaaaattatg 108
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 69.9 bits (35), Expect = 9e-12
Identities = 77/91 (84%)
Strand = Plus / Plus
Query: 14 tactccctccgatcctaaattgttgtcaaaatattacgcgtatctaaacactttttaata 73
||||||||||||||| | | ||||||||||||||| |||||||||| |||||||
Sbjct: 5 tactccctccgatccatattaattgtcaaaatattacatgtatctaaacgctttttaggc 64
Query: 74 atagatacattcatatttggacaaatttgag 104
|||||||||| ||||||||| |||||||||
Sbjct: 65 atagatacatccatatttgggaaaatttgag 95
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 69.9 bits (35), Expect = 9e-12
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 53 gtatctaaacactttttaataatagatacattcatatttggacaaatttgagtca 107
||||||| || |||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 82 gtatctagacgctttttaagcatagatacatccatatttggacaaatttgagtca 28
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 69.9 bits (35), Expect = 9e-12
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 53 gtatctaaacactttttaataatagatacattcatatttggacaaatttgagtca 107
||||||| |||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 44 gtatctagacactttttagacatagatacatccatatttggacaaatttgagtca 98
>RF00906;MIR1122;EU730898.1/54746-54622 15368:Brachypodium
distachyon
Length = 125
Score = 69.9 bits (35), Expect = 9e-12
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 31 aattgttgtcaaaatattacgcgtatctaaacactttttaataatagatacattcatatt 90
|||| ||||||||||||||| ||||||| |||||||||| ||||||||||| || ||
Sbjct: 104 aattcttgtcaaaatattacatgtatctagacactttttagaaatagatacatctatttt 45
Query: 91 tggacaaatttgagtcaagaatt 113
|| |||||||||| ||||||||
Sbjct: 44 tgagcaaatttgagacaagaatt 22
>RF00906;MIR1122;EF059989.1/156495-156619 29664:Brachypodium
sylvaticum
Length = 125
Score = 67.9 bits (34), Expect = 3e-11
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 36 ttgtcaaaatattacgcgtatctaaacactttttaataatagatacattcatatttggac 95
||||| ||||||||| ||||||| || ||||||| |||||||||||| |||||||||
Sbjct: 27 ttgtcgaaatattacatgtatctagactctttttacacatagatacattcgtatttggac 86
Query: 96 aaatttgagtcaag 109
||||||||| ||||
Sbjct: 87 aaatttgagacaag 100
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 61.9 bits (31), Expect = 2e-09
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 31 aattgttgtcaaaatattacgcgtatctaaacactttttaataatagatacattcatatt 90
|||| ||||| ||||||||| ||||||| || ||||||| ||||||||||| || ||
Sbjct: 22 aattcttgtcgaaatattacatgtatctagacgctttttaggaatagatacatccaattt 81
Query: 91 tggacaaatttgagtcaagaatt 113
||| |||||||||| ||||||||
Sbjct: 82 tgggcaaatttgagacaagaatt 104
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 61.9 bits (31), Expect = 2e-09
Identities = 76/91 (83%)
Strand = Plus / Minus
Query: 14 tactccctccgatcctaaattgttgtcaaaatattacgcgtatctaaacactttttaata 73
||||||||||||||| | | |||||| ||||||||| ||||||| || |||||||
Sbjct: 121 tactccctccgatccatattagttgtcgaaatattacatgtatctagacgctttttaggc 62
Query: 74 atagatacattcatatttggacaaatttgag 104
|||||||||| ||||| ||| ||||||||||
Sbjct: 61 atagatacatccatatctgggcaaatttgag 31
>RF00906;MIR1122;EU730895.1/40339-40463 15368:Brachypodium
distachyon
Length = 125
Score = 60.0 bits (30), Expect = 8e-09
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 36 ttgtcaaaatattacgcgtatctaaacactttttaataatagatacattcatatttggac 95
||||| ||||||||| |||||| |||||||||| ||||||||||||||||||| |
Sbjct: 27 ttgtcgaaatattacatttatctagtcactttttaaacatagatacattcatatttgatc 86
Query: 96 aaatttgagtcaag 109
||||||||| ||||
Sbjct: 87 aaatttgagacaag 100
>RF00906;MIR1122;EU730894.1/127135-127259 15368:Brachypodium
distachyon
Length = 125
Score = 60.0 bits (30), Expect = 8e-09
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 36 ttgtcaaaatattacgcgtatctaaacactttttaataatagatacattcatatttggac 95
||||| ||||||||| ||||||| |||||||||| ||||||||||| ||||||| |
Sbjct: 27 ttgtcgaaatattacatgtatctagacactttttacacgtagatacattcgtatttgggc 86
Query: 96 aaatttgagtcaag 109
||||||||| ||||
Sbjct: 87 aaatttgagacaag 100
>RF00906;MIR1122;EU730901.1/108914-109038 15368:Brachypodium
distachyon
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 14 tactccctccgatcctaaattgttgtcaaaatattacgcgtatctaaacactttttaata 73
||||||| ||| ||| |||| ||||| |||| |||| ||||||| |||||||||| |
Sbjct: 121 tactcccgccgttccataattcttgtcgaaatcttacatgtatctagacactttttatga 62
Query: 74 atagatacattcatatttggacaaatttgagtcaagaatt 113
|||||||||| ||| |||| ||| |||||| ||||||||
Sbjct: 61 atagatacatccatttttgagcaactttgagacaagaatt 22
>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
distachyon
Length = 125
Score = 54.0 bits (27), Expect = 5e-07
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 31 aattgttgtcaaaatattacgcgtatctaaacactttttaataatagatacattcatatt 90
|||| ||||| ||||||| | |||||||||| | ||||| ||||||||||| ||| ||
Sbjct: 104 aattcttgtcgaaatattgcatgtatctaaacgccttttaggaatagatacatccatttt 45
Query: 91 tggacaaatttgagtcaagaatt 113
||| |||||||||| ||| ||||
Sbjct: 44 tgggcaaatttgagacaaaaatt 22
>RF00906;MIR1122;EU730895.1/40632-40541 15368:Brachypodium
distachyon
Length = 92
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 10 atagtactccctccgatcctaaattgttgt 39
||||||||||||||||||||||||| ||||
Sbjct: 1 atagtactccctccgatcctaaattcttgt 30
>RF00906;MIR1122;EF059989.1/159537-159414 29664:Brachypodium
sylvaticum
Length = 124
Score = 52.0 bits (26), Expect = 2e-06
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Minus
Query: 42 aaatattacgcgtatctaaacactttttaataatagatacattcatatttggacaaattt 101
||||||||| ||||||| || |||||| ||| |||||||| |||||||||||| |||||
Sbjct: 92 aaatattacatgtatctagacgctttttgata-tagatacaatcatatttggacgaattt 34
Query: 102 ga 103
||
Sbjct: 33 ga 32
>RF00906;MIR1122;EU730902.1/55282-55158 15368:Brachypodium
distachyon
Length = 125
Score = 50.1 bits (25), Expect = 8e-06
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 37 tgtcaaaatattacgcgtatctaaacactttttaataatagatacattcatatttggaca 96
|||| ||||||||| ||||||| || | ||||| ||||||||||| ||| |||| ||
Sbjct: 98 tgtcgaaatattacatgtatctagacgcattttagaaatagatacatccatctttgagca 39
Query: 97 aatttgagtcaagaatt 113
|||||||| ||||||||
Sbjct: 38 aatttgagacaagaatt 22
>RF00906;MIR1122;EU730899.1/99199-99323 15368:Brachypodium
distachyon
Length = 125
Score = 50.1 bits (25), Expect = 8e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 73 aatagatacattcatatttggacaaatttgagtcaagaatt 113
||||||||||| ||| ||||| |||||||||| ||||||||
Sbjct: 64 aatagatacatccatttttgggcaaatttgagacaagaatt 104
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 50.1 bits (25), Expect = 8e-06
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 13 gtactccctccgatcctaaattgttgtcaaaatattacgcgtatctaaacactttttaat 72
|||||||||||||||| | | ||||||||||||||| ||||||| || ||||||
Sbjct: 112 gtactccctccgatccatattaattgtcaaaatattacatgtatctagacgttttttatg 53
Query: 73 aatagatacattcatatttgg 93
|||||||||| |||||||||
Sbjct: 52 catagatacatccatatttgg 32
>RF00906;MIR1122;AF254799.1/46723-46588 4513:Hordeum vulgare
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 75 tagatacattcatatttggacaaatttgagtcaagaattt 114
||||||||||||||| | ||||||||| || |||||||||
Sbjct: 60 tagatacattcatatatagacaaatttaagacaagaattt 21
>RF00906;MIR1122;DQ145528.1/676-542 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 75 tagatacattcatatttggacaaatttgagtcaagaattt 114
||||||||||||||||| ||||||| | || |||||||||
Sbjct: 60 tagatacattcatatttagacaaatctaagacaagaattt 21
>RF00906;MIR1122;EU730902.1/79802-79895 15368:Brachypodium
distachyon
Length = 94
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 gtactccctccgatcctaaattgttgtc 40
|||||||||||||||||||||| |||||
Sbjct: 4 gtactccctccgatcctaaattcttgtc 31
>RF00906;MIR1122;EF059989.1/222260-222384 29664:Brachypodium
sylvaticum
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 81/100 (81%)
Strand = Plus / Minus
Query: 14 tactccctccgatcctaaattgttgtcaaaatattacgcgtatctaaacactttttaata 73
||||||||||| | | |||| ||||| |||| |||| ||||||| || |||||| |
Sbjct: 121 tactccctccgtttcataattcttgtcgaaatcttacatgtatctagacgttttttatga 62
Query: 74 atagatacattcatatttggacaaatttgagtcaagaatt 113
||| |||||| ||| |||||||||||| ||| ||||||||
Sbjct: 61 atatatacatccatttttggacaaattcgagccaagaatt 22
>RF00906;MIR1122;EU730901.1/58586-58463 15368:Brachypodium
distachyon
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 78 atacattcatatttggacaaatttgagtca 107
|||||| ||||| |||||||||||||||||
Sbjct: 57 atacatccatatctggacaaatttgagtca 28
>RF00906;MIR1122;EF059989.1/54267-54145 29664:Brachypodium
sylvaticum
Length = 123
Score = 44.1 bits (22), Expect = 5e-04
Identities = 82/101 (81%), Gaps = 2/101 (1%)
Strand = Plus / Minus
Query: 13 gtactccctccgatcctaaattgttgtcaaaatattacgcgtatctaaacactttttaat 72
|||||||||||| || |||| | ||| ||||||||| ||||||| | | ||||| |
Sbjct: 120 gtactccctccgtcccataattctcgtcgaaatattacatgtatctagatatttttttaa 61
Query: 73 aatagatacattcatatttggacaaatttgagtcaagaatt 113
||||||||||| ||| ||||| ||||||||| ||||||||
Sbjct: 60 aatagatacatccatttttgg--aaatttgagacaagaatt 22
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 74 atagatacattcatatttggacaaatttgagtca 107
|||||||| | ||||||| |||||||||||||||
Sbjct: 66 atagatacgtccatatttagacaaatttgagtca 99
