miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 143 bits (72), Expect = 2e-33
Identities = 102/112 (91%)
Strand = Plus / Minus
Query: 80 tacttcctccgtactataattcttgtctaaaatttgcccaaatatggatatatctattcc 139
|||| ||||||| | ||||||||||||| ||||||||||||| ||||| ||||||||||
Sbjct: 121 tactccctccgttccataattcttgtctcaaatttgcccaaaattggatgtatctattcc 62
Query: 140 taaaaagcgtctaggtacatgtaatatttcgacaagaattatgaaacggagg 191
|||||||||||||| |||||||||||||||||||||||||||| ||| ||||
Sbjct: 61 taaaaagcgtctagatacatgtaatatttcgacaagaattatggaacagagg 10
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 170 gacaagaattatgaaacggagggaatatatt 200
||||||||||||| |||||||||| ||||||
Sbjct: 95 gacaagaattatggaacggagggagtatatt 125
>RF00906;MIR1122;EU730899.1/90906-91030 15368:Brachypodium
distachyon
Length = 125
Score = 139 bits (70), Expect = 3e-32
Identities = 103/114 (90%)
Strand = Plus / Minus
Query: 80 tacttcctccgtactataattcttgtctaaaatttgcccaaatatggatatatctattcc 139
|||| ||||||| | ||||||||||||| ||||||| ||||| ||| || ||||||||||
Sbjct: 121 tactccctccgttcgataattcttgtctcaaatttgaccaaaaatgaatgtatctattcc 62
Query: 140 taaaaagcgtctaggtacatgtaatatttcgacaagaattatgaaacggaggga 193
||||||| |||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 61 taaaaagtgtctagatacatgtaatatttcaacaagaattatgaaacggaggga 8
>RF00906;MIR1122;EU730902.1/55282-55158 15368:Brachypodium
distachyon
Length = 125
Score = 125 bits (63), Expect = 4e-28
Identities = 90/99 (90%)
Strand = Plus / Plus
Query: 95 ataattcttgtctaaaatttgcccaaatatggatatatctattcctaaaaagcgtctagg 154
||||||||||||| |||||||| |||| |||||| |||||||| |||||| ||||||||
Sbjct: 20 ataattcttgtctcaaatttgctcaaagatggatgtatctatttctaaaatgcgtctaga 79
Query: 155 tacatgtaatatttcgacaagaattatgaaacggaggga 193
||||||||||||||||||| |||||| ||||||||||||
Sbjct: 80 tacatgtaatatttcgacatgaattacgaaacggaggga 118
>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
distachyon
Length = 125
Score = 125 bits (63), Expect = 4e-28
Identities = 99/111 (89%)
Strand = Plus / Plus
Query: 80 tacttcctccgtactataattcttgtctaaaatttgcccaaatatggatatatctattcc 139
|||| ||||||| | |||||| |||||| ||||||||||||| |||||| ||||||||||
Sbjct: 5 tactccctccgttccataatttttgtctcaaatttgcccaaaaatggatgtatctattcc 64
Query: 140 taaaaagcgtctaggtacatgtaatatttcgacaagaattatgaaacggag 190
||||| |||| ||| |||||| ||||||||||||||||||||| |||||||
Sbjct: 65 taaaaggcgtttagatacatgcaatatttcgacaagaattatggaacggag 115
>RF00906;MIR1122;EF059989.1/55128-55252 29664:Brachypodium
sylvaticum
Length = 125
Score = 125 bits (63), Expect = 4e-28
Identities = 78/83 (93%)
Strand = Plus / Minus
Query: 97 aattcttgtctaaaatttgcccaaatatggatatatctattcctaaaaagcgtctaggta 156
|||||||| || |||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 104 aattcttgactcaaatttgcccaaatatggatatatctattcttaaaaagcgtctagata 45
Query: 157 catgtaatatttcgacaagaatt 179
|||||||||||||||||| ||||
Sbjct: 44 catgtaatatttcgacaacaatt 22
>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
distachyon
Length = 127
Score = 121 bits (61), Expect = 7e-27
Identities = 103/116 (88%), Gaps = 2/116 (1%)
Strand = Plus / Plus
Query: 80 tacttcctccgtactataattcttgtctaaaatttgcccaaatatggatatatctattcc 139
|||| ||||||| | ||||||||||||| ||||| |||||| |||||| ||||||||||
Sbjct: 5 tactccctccgttccataattcttgtctcaaattaacccaaaaatggatgtatctattcc 64
Query: 140 taaaaagc--gtctaggtacatgtaatatttcgacaagaattatgaaacggaggga 193
|||||| | |||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 65 taaaaaacacgtctagatacatgtaatatttcgacaagaattatggaacggaggga 120
>RF00906;MIR1122;EU730898.1/54746-54622 15368:Brachypodium
distachyon
Length = 125
Score = 119 bits (60), Expect = 3e-26
Identities = 87/96 (90%)
Strand = Plus / Plus
Query: 95 ataattcttgtctaaaatttgcccaaatatggatatatctattcctaaaaagcgtctagg 154
||||||||||||| |||||||| |||| || ||| |||||||| |||||||| ||||||
Sbjct: 20 ataattcttgtctcaaatttgctcaaaaatagatgtatctatttctaaaaagtgtctaga 79
Query: 155 tacatgtaatatttcgacaagaattatgaaacggag 190
|||||||||||||| |||||||||||||||||||||
Sbjct: 80 tacatgtaatattttgacaagaattatgaaacggag 115
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 170 gacaagaattatgaaacggaggga 193
||||||||||||||||||||||||
Sbjct: 31 gacaagaattatgaaacggaggga 8
>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
sylvaticum
Length = 124
Score = 117 bits (59), Expect = 1e-25
Identities = 77/83 (92%)
Strand = Plus / Minus
Query: 97 aattcttgtctaaaatttgcccaaatatggatatatctattcctaaaaagcgtctaggta 156
||||||||||| |||||||||||||||||||| ||||||||| ||||| |||||||| ||
Sbjct: 104 aattcttgtctcaaatttgcccaaatatggatgtatctattcttaaaacgcgtctagata 45
Query: 157 catgtaatatttcgacaagaatt 179
|||||||||||||||||| ||||
Sbjct: 44 catgtaatatttcgacaataatt 22
>RF00906;MIR1122;EU730901.1/108914-109038 15368:Brachypodium
distachyon
Length = 125
Score = 115 bits (58), Expect = 4e-25
Identities = 100/114 (87%)
Strand = Plus / Plus
Query: 80 tacttcctccgtactataattcttgtctaaaatttgcccaaatatggatatatctattcc 139
|||| ||||||| | ||||||||||||| ||| |||| |||| |||||| |||||||||
Sbjct: 5 tactccctccgttccataattcttgtctcaaagttgctcaaaaatggatgtatctattca 64
Query: 140 taaaaagcgtctaggtacatgtaatatttcgacaagaattatgaaacggaggga 193
||||||| |||||| ||||||||| |||||||||||||||||| ||||| ||||
Sbjct: 65 taaaaagtgtctagatacatgtaagatttcgacaagaattatggaacggcggga 118
>RF00906;MIR1122;EU730899.1/99199-99323 15368:Brachypodium
distachyon
Length = 125
Score = 115 bits (58), Expect = 4e-25
Identities = 100/114 (87%)
Strand = Plus / Minus
Query: 78 tgtacttcctccgtactataattcttgtctaaaatttgcccaaatatggatatatctatt 137
|||||| | ||||| | ||||||||||||| ||||||||||||| |||||| ||||||||
Sbjct: 123 tgtactccttccgttccataattcttgtctcaaatttgcccaaaaatggatgtatctatt 64
Query: 138 cctaaaaagcgtctaggtacatgtaatatttcgacaagaattatgaaacggagg 191
||| | | |||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 63 ccttcgaggtgtctagatacatgtaatatttcgacaagaattatggaacggagg 10
>RF00906;MIR1122;EF059989.1/222260-222384 29664:Brachypodium
sylvaticum
Length = 125
Score = 109 bits (55), Expect = 3e-23
Identities = 88/99 (88%)
Strand = Plus / Plus
Query: 95 ataattcttgtctaaaatttgcccaaatatggatatatctattcctaaaaagcgtctagg 154
|||||||||| || |||||| ||||| |||||| ||| ||||| |||||| |||||||
Sbjct: 20 ataattcttggctcgaatttgtccaaaaatggatgtatatattcataaaaaacgtctaga 79
Query: 155 tacatgtaatatttcgacaagaattatgaaacggaggga 193
||||||||| |||||||||||||||||||||||||||||
Sbjct: 80 tacatgtaagatttcgacaagaattatgaaacggaggga 118
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 105 bits (53), Expect = 4e-22
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 102 ttgtctaaaatttgcccaaatatggatatatctattcctaaaaagcgtctaggtacatgt 161
|||||| ||||||||||| |||||||| ||||||| |||||||||||||||| |||||||
Sbjct: 27 ttgtctcaaatttgcccagatatggatgtatctatgcctaaaaagcgtctagatacatgt 86
Query: 162 aatatttcgacaa 174
|||||||||||||
Sbjct: 87 aatatttcgacaa 99
>RF00906;MIR1122;EU730898.1/63863-63739 15368:Brachypodium
distachyon
Length = 125
Score = 103 bits (52), Expect = 2e-21
Identities = 82/92 (89%)
Strand = Plus / Minus
Query: 102 ttgtctaaaatttgcccaaatatggatatatctattcctaaaaagcgtctaggtacatgt 161
|||||| ||||||||||||| || || |||||||| ||||||||||||||| |||| ||
Sbjct: 99 ttgtctcaaatttgcccaaaattgaatgtatctattactaaaaagcgtctagatacacgt 40
Query: 162 aatatttcgacaagaattatgaaacggaggga 193
||| ||||||||||||||||| ||||||||||
Sbjct: 39 aatgtttcgacaagaattatggaacggaggga 8
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 101 bits (51), Expect = 6e-21
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 103 tgtctaaaatttgcccaaatatggatatatctattcctaaaaagcgtctaggtacatgta 162
||||| |||||||||||||||||||| ||||||| |||||||||| ||||| ||||||||
Sbjct: 27 tgtctcaaatttgcccaaatatggatgtatctatacctaaaaagcatctagatacatgta 86
Query: 163 atatttcgaca 173
|||||||||||
Sbjct: 87 atatttcgaca 97
>RF00906;MIR1122;EU730902.1/30283-30160 15368:Brachypodium
distachyon
Length = 124
Score = 93.7 bits (47), Expect = 2e-18
Identities = 87/99 (87%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 95 ataattcttgtctaaaatttgcccaaatatggatatatctattcctaaaaagcgtctagg 154
||||||||||||| ||||||||||||| ||| || || ||||| ||||||||||| |||
Sbjct: 20 ataattcttgtctcaaatttgcccaaaaatg-atgtagctatttctaaaaagcgtttaga 78
Query: 155 tacatgtaatatttcgacaagaattatgaaacggaggga 193
| ||| | ||||||||||||||||||||| |||||||||
Sbjct: 79 tgcatctgatatttcgacaagaattatgagacggaggga 117
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 89.7 bits (45), Expect = 2e-17
Identities = 66/73 (90%)
Strand = Plus / Minus
Query: 102 ttgtctaaaatttgcccaaatatggatatatctattcctaaaaagcgtctaggtacatgt 161
|||||| |||||| ||||||||||||| ||||||| |||||||||||| ||| |||||||
Sbjct: 99 ttgtctcaaattttcccaaatatggatgtatctatgcctaaaaagcgtttagatacatgt 40
Query: 162 aatatttcgacaa 174
||||||| |||||
Sbjct: 39 aatattttgacaa 27
>RF00906;MIR1122;EF059989.1/67137-67261 29664:Brachypodium
sylvaticum
Length = 125
Score = 77.8 bits (39), Expect = 9e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 101 cttgtctaaaatttgcccaaatatggatatatctattcctaaaaagcgtctaggtacatg 160
||||||| ||| |||||||||||||||| ||| ||| | |||||||||| ||| ||||||
Sbjct: 26 cttgtctcaaaattgcccaaatatggatgtatatatgcgtaaaaagcgtttagatacatg 85
Query: 161 taatatttcga 171
|||||||||||
Sbjct: 86 taatatttcga 96
>RF00906;MIR1122;EF059989.1/52700-52824 29664:Brachypodium
sylvaticum
Length = 125
Score = 77.8 bits (39), Expect = 9e-14
Identities = 66/75 (88%)
Strand = Plus / Minus
Query: 101 cttgtctaaaatttgcccaaatatggatatatctattcctaaaaagcgtctaggtacatg 160
||||||| ||||||||||||||| | || |||||| |||||||||||||| ||||||
Sbjct: 100 cttgtctcaaatttgcccaaatacgaatgcatctatgtttaaaaagcgtctagatacatg 41
Query: 161 taatatttcgacaag 175
|||||||||||||||
Sbjct: 40 taatatttcgacaag 26
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 73.8 bits (37), Expect = 1e-12
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 109 aaatttgcccaaatatggatatatctattcctaaaaagcgtctaggtacatgtaata 165
||||||| |||||||||||| ||||||| | |||||||||||||| |||||||||||
Sbjct: 34 aaatttgtccaaatatggatgtatctatgcttaaaaagcgtctagatacatgtaata 90
>RF00906;MIR1122;EU730896.1/41625-41750 15368:Brachypodium
distachyon
Length = 126
Score = 73.8 bits (37), Expect = 1e-12
Identities = 92/109 (84%), Gaps = 1/109 (0%)
Strand = Plus / Plus
Query: 86 ctccgtactataattcttgtctaaaatttg-cccaaatatggatatatctattcctaaaa 144
|||||| | ||||||||||||| ||||||| ||| |||||| ||| |||||| ||||
Sbjct: 11 ctccgttccataattcttgtctcaaatttgataaaaaaatggatgtatttattccgaaaa 70
Query: 145 agcgtctaggtacatgtaatatttcgacaagaattatgaaacggaggga 193
|| |||||| || |||||||||| ||||||||||||| ||||||||||
Sbjct: 71 agtgtctagatatatgtaatattgagacaagaattatggaacggaggga 119
>RF00906;MIR1122;EF059989.1/54267-54145 29664:Brachypodium
sylvaticum
Length = 123
Score = 71.9 bits (36), Expect = 6e-12
Identities = 84/99 (84%), Gaps = 2/99 (2%)
Strand = Plus / Plus
Query: 95 ataattcttgtctaaaatttgcccaaatatggatatatctattcctaaaaagcgtctagg 154
||||||||||||| |||||| ||||| |||||| |||||||| ||||| |||||
Sbjct: 20 ataattcttgtctcaaattt--ccaaaaatggatgtatctattttaaaaaaatatctaga 77
Query: 155 tacatgtaatatttcgacaagaattatgaaacggaggga 193
|||||||||||||||||| ||||||||| |||||||||
Sbjct: 78 tacatgtaatatttcgacgagaattatgggacggaggga 116
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 170 gacaagaattatgaaacggaggga 193
||||||||||||||||||||||||
Sbjct: 31 gacaagaattatgaaacggaggga 8
>RF00906;MIR1122;EU730894.1/127135-127259 15368:Brachypodium
distachyon
Length = 125
Score = 69.9 bits (35), Expect = 2e-11
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 101 cttgtctaaaatttgcccaaatatggatatatctattcctaaaaagcgtctaggtacatg 160
||||||| ||||||||||||||| | || |||||| ||||||| |||||| ||||||
Sbjct: 100 cttgtctcaaatttgcccaaatacgaatgtatctacgtgtaaaaagtgtctagatacatg 41
Query: 161 taatatttcgacaag 175
|||||||||||||||
Sbjct: 40 taatatttcgacaag 26
>RF00906;MIR1122;EF059989.1/156495-156619 29664:Brachypodium
sylvaticum
Length = 125
Score = 69.9 bits (35), Expect = 2e-11
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 101 cttgtctaaaatttgcccaaatatggatatatctattcctaaaaagcgtctaggtacatg 160
||||||| ||||||| ||||||| | || ||||||| ||||||| |||||| ||||||
Sbjct: 100 cttgtctcaaatttgtccaaatacgaatgtatctatgtgtaaaaagagtctagatacatg 41
Query: 161 taatatttcgacaag 175
|||||||||||||||
Sbjct: 40 taatatttcgacaag 26
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 69.9 bits (35), Expect = 2e-11
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 116 cccaaatatggatatatctattcctaaaaagcgtctaggtacatgtaatatttcgacaa 174
||||||||||||| ||||||| | |||||| ||||||| |||||||||||||| |||||
Sbjct: 31 cccaaatatggatgtatctatgcataaaaaacgtctagatacatgtaatattttgacaa 89
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 65.9 bits (33), Expect = 3e-10
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 109 aaatttgcccaaatatggatatatctattcctaaaaagcgtctaggtacatgtaata 165
||||||| |||||||||||| ||||||| |||||||| |||||| |||||||||||
Sbjct: 92 aaatttgtccaaatatggatgtatctatgtctaaaaagtgtctagatacatgtaata 36
>RF00906;MIR1122;EU730901.1/65072-65195 15368:Brachypodium
distachyon
Length = 124
Score = 61.9 bits (31), Expect = 5e-09
Identities = 65/75 (86%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 101 cttgtctaaaatttgcccaaatatggatatatctattcctaaaaagcgtctaggtacatg 160
||||||| |||||||||||||| |||| ||||||| |||||| ||||||| |||||
Sbjct: 99 cttgtctcaaatttgcccaaatgcggatgtatctatgtgtaaaaa-cgtctagatacata 41
Query: 161 taatatttcgacaag 175
|||||||||||||||
Sbjct: 40 taatatttcgacaag 26
>RF00906;MIR1122;EU730894.1/121201-121325 15368:Brachypodium
distachyon
Length = 125
Score = 61.9 bits (31), Expect = 5e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 109 aaatttgcccaaatatggatatatctattcctaaaaagcgtctaggtacatgtaatattt 168
|||||||||||| ||||||| | || || |||||||| ||||| ||||||||||||||
Sbjct: 34 aaatttgcccaattatggatgtgtcaatgtttaaaaagcatctagatacatgtaatattt 93
Query: 169 cgacaag 175
|||||||
Sbjct: 94 cgacaag 100
>RF00906;MIR1122;EF059989.1/223398-223521 29664:Brachypodium
sylvaticum
Length = 124
Score = 60.0 bits (30), Expect = 2e-08
Identities = 70/82 (85%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 110 aatttgcccaaatatggatatatctattcctaaaaagcgtctaggtacatgtaatatttc 169
|||||| |||||||| ||| ||| ||| ||||||||| |||| | |||||||||||||||
Sbjct: 35 aatttgtccaaatatagatgtatttatacctaaaaag-gtctggatacatgtaatatttc 93
Query: 170 gacaagaattatgaaacggagg 191
||||| | |||| ||||||||
Sbjct: 94 gacaattaatatggaacggagg 115
>RF00906;MIR1122;EU730895.1/40339-40463 15368:Brachypodium
distachyon
Length = 125
Score = 54.0 bits (27), Expect = 1e-06
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 101 cttgtctaaaatttgcccaaatatggatatatctattcctaaaaagcgtctaggtacatg 160
||||||| ||||||| |||||||| || ||||||| ||||||| | |||| || |||
Sbjct: 100 cttgtctcaaatttgatcaaatatgaatgtatctatgtttaaaaagtgactagataaatg 41
Query: 161 taatatttcgacaag 175
|||||||||||||||
Sbjct: 40 taatatttcgacaag 26
>RF00906;MIR1122;EF059989.1/159537-159414 29664:Brachypodium
sylvaticum
Length = 124
Score = 52.0 bits (26), Expect = 5e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 141 aaaaagcgtctaggtacatgtaatatttcg 170
||||||||||||| ||||||||||||||||
Sbjct: 65 aaaaagcgtctagatacatgtaatatttcg 94
>RF00906;MIR1122;EF059989.1/365637-365513 29664:Brachypodium
sylvaticum
Length = 125
Score = 48.1 bits (24), Expect = 8e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 118 caaatatggatatatctattcctaaaaagcgtctaggtacatgtaata 165
||||||||||| ||||||| |||||||| |||||| | |||||||||
Sbjct: 43 caaatatggatgtatctatgcctaaaaaatgtctagatgcatgtaata 90
