miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 165 bits (83), Expect = 2e-40
Identities = 98/103 (95%)
Strand = Plus / Minus
Query: 13 tactccctccgtcccatattaagtgtcaaaatattacatgtatctagacgttttttaggt 72
||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||
Sbjct: 120 tactccctccgtcccatattaagtgtcgaaatattacatgtatctagatgctttttaggt 61
Query: 73 atagatacatccatctttggacaaatttgagacacttaatatg 115
|||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 60 atagatacatccatatttgggcaaatttgagacacttaatatg 18
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 141 bits (71), Expect = 3e-33
Identities = 108/119 (90%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 13 tactccctccgtcccatattaagtgtcaaaatattacatgtatctagacgttttttag-g 71
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct: 5 tactccctccgtcccatattaagtttcgaaatattacatgtatctagacgtattttagta 64
Query: 72 tatagatacatccatctttggacaaatttgagacacttaatatgagatggagggagtat 130
||||||||| ||||| ||| |||||||||||| ||||||||||| || |||||||||||
Sbjct: 65 tatagatacgtccatttttagacaaatttgagtcacttaatatgggacggagggagtat 123
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 13 tactccctccgtcccatattaagtg 37
|||||||||||||||||||||||||
Sbjct: 122 tactccctccgtcccatattaagtg 98
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 131 bits (66), Expect = 3e-30
Identities = 105/118 (88%)
Strand = Plus / Minus
Query: 13 tactccctccgtcccatattaagtgtcaaaatattacatgtatctagacgttttttaggt 72
|||||||||||||||||||||| || | ||||||||||||||||||| |||||| |
Sbjct: 121 tactccctccgtcccatattaattgactttctattacatgtatctagacgctttttaagc 62
Query: 73 atagatacatccatctttggacaaatttgagacacttaatatgagatggagggagtat 130
|||||||||||||| |||||||||||||||| ||||||||||| || |||||||||||
Sbjct: 61 atagatacatccatatttggacaaatttgagtcacttaatatgggacggagggagtat 4
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tactccctccgtcccatattaagtg 37
|||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccatattaagtg 29
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 129 bits (65), Expect = 1e-29
Identities = 104/117 (88%)
Strand = Plus / Plus
Query: 13 tactccctccgtcccatattaagtgtcaaaatattacatgtatctagacgttttttaggt 72
||||||||||||||| ||||||||| | |||||||||||||||||| |||||||
Sbjct: 5 tactccctccgtcccgtattaagtgactttctattacatgtatctagacactttttagac 64
Query: 73 atagatacatccatctttggacaaatttgagacacttaatatgagatggagggagta 129
|||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 65 atagatacatccatatttggacaaatttgagtcacttaatatgagacggagggagta 121
>RF00906;MIR1122;EF059989.1/74343-74464 29664:Brachypodium
sylvaticum
Length = 122
Score = 123 bits (62), Expect = 7e-28
Identities = 102/113 (90%), Gaps = 3/113 (2%)
Strand = Plus / Minus
Query: 18 cctccgtcccatattaagtgtcaaaatattacatgtatctagacgttttttaggtataga 77
||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 113 cctccgtcctatattaagtgtcaaaacattacatgtatctagacgttttttaactataga 54
Query: 78 tacatccatctttggacaaatttgagacacttaatatgagatggagggagtat 130
||||||||| ||| | ||||||||||||||||| ||| || |||||||||||
Sbjct: 53 tacatccatgttt--aaaaatttgagacacttaacatg-gacggagggagtat 4
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 119 bits (60), Expect = 1e-26
Identities = 93/104 (89%)
Strand = Plus / Plus
Query: 12 ctactccctccgtcccatattaagtgtcaaaatattacatgtatctagacgttttttagg 71
|||||||||||| ||||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct: 4 ctactccctccgatccatattaattgtcaaaatattacatgtatctaaacgctttttagg 63
Query: 72 tatagatacatccatctttggacaaatttgagacacttaatatg 115
|||||||||||||| ||||| |||||||||||| || |||||
Sbjct: 64 catagatacatccatatttgggaaaatttgagacaattgatatg 107
>RF00906;MIR1122;EF059989.1/159537-159414 29664:Brachypodium
sylvaticum
Length = 124
Score = 117 bits (59), Expect = 4e-26
Identities = 102/115 (88%), Gaps = 1/115 (0%)
Strand = Plus / Minus
Query: 15 ctccctccgtcccatattaagtgtcaaaatattacatgtatctagacgttttttaggtat 74
||||||||||| ||||||||||| | |||||||||||||||||||||| ||||| | |||
Sbjct: 118 ctccctccgtctcatattaagtgacgaaatattacatgtatctagacgcttttt-gatat 60
Query: 75 agatacatccatctttggacaaatttgagacacttaatatgagatggagggagta 129
||||||| ||| ||||||| ||||||| |||||||||||||| ||||||||||
Sbjct: 59 agatacaatcatatttggacgaatttgaatcacttaatatgagacggagggagta 5
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 111 bits (56), Expect = 3e-24
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 13 tactccctccgtcccatattaagtgtcaaaatattacatgtatctagacgttttttaggt 72
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 111 tactccctccgatccatattaattgtcaaaatattacatgtatctagacgttttttatgc 52
Query: 73 atagatacatccatctttgg 92
|||||||||||||| |||||
Sbjct: 51 atagatacatccatatttgg 32
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 111 bits (56), Expect = 3e-24
Identities = 92/104 (88%)
Strand = Plus / Minus
Query: 12 ctactccctccgtcccatattaagtgtcaaaatattacatgtatctagacgttttttagg 71
|||||||||||| |||||||| |||| |||||||||||||||||||||| ||||||||
Sbjct: 122 ctactccctccgatccatattagttgtcgaaatattacatgtatctagacgctttttagg 63
Query: 72 tatagatacatccatctttggacaaatttgagacacttaatatg 115
|||||||||||||| | ||| ||||||||||||| || |||||
Sbjct: 62 catagatacatccatatctgggcaaatttgagacaattgatatg 19
>RF00906;MIR1122;EU730895.1/70118-69993 15368:Brachypodium
distachyon
Length = 126
Score = 107 bits (54), Expect = 4e-23
Identities = 103/118 (87%), Gaps = 1/118 (0%)
Strand = Plus / Plus
Query: 13 tactccctccgtcccatattaagtgtcaaaatattacatgtatctagacgttttttag-g 71
||||||||||||||||||||||||| | |||||||| ||||||||| || | ||||||
Sbjct: 5 tactccctccgtcccatattaagtgccgaaatattatatgtatctaaacatattttagta 64
Query: 72 tatagatacatccatctttggacaaatttgagacacttaatatgagatggagggagta 129
||||||||| | ||| ||| ||||||||| || ||||||||||| |||||||||||||
Sbjct: 65 tatagatacgtacatttttagacaaatttaagtcacttaatatgggatggagggagta 122
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 107 bits (54), Expect = 4e-23
Identities = 103/118 (87%), Gaps = 1/118 (0%)
Strand = Plus / Plus
Query: 13 tactccctccgtcccatattaagtgtcaaaatattacatgtatctagacgttttttagg- 71
|||||||||||||||| |||||||| | ||||||||||||||||||||||| |||
Sbjct: 5 tactccctccgtcccaaattaagtgactttctattacatgtatctagacgttttctagta 64
Query: 72 tatagatacatccatctttggacaaatttgagacacttaatatgagatggagggagta 129
||||||||| ||||| ||| |||||||||||| ||||||||||| || ||||||||||
Sbjct: 65 tatagatacgtccatatttagacaaatttgagtcacttaatatgggacggagggagta 122
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 12 ctactccctccgtcccatattaagtg 37
||||||||||||||||||||||||||
Sbjct: 123 ctactccctccgtcccatattaagtg 98
>RF00906;MIR1122;EF059989.1/223398-223521 29664:Brachypodium
sylvaticum
Length = 124
Score = 105 bits (53), Expect = 2e-22
Identities = 102/117 (87%), Gaps = 1/117 (0%)
Strand = Plus / Minus
Query: 13 tactccctccgtcccatattaagtgtcaaaatattacatgtatctagacgttttttaggt 72
|||| ||||||| ||||||||| |||| |||||||||||||||| |||| ||||| ||||
Sbjct: 120 tacttcctccgttccatattaattgtcgaaatattacatgtatccagaccttttt-aggt 62
Query: 73 atagatacatccatctttggacaaatttgagacacttaatatgagatggagggagta 129
||| ||||||| || |||||||||||| |||||| |||||||| || |||||||||
Sbjct: 61 ataaatacatctatatttggacaaattcgagacaattaatatgggacagagggagta 5
>RF00906;MIR1122;EF059989.1/365637-365513 29664:Brachypodium
sylvaticum
Length = 125
Score = 97.6 bits (49), Expect = 4e-20
Identities = 100/117 (85%)
Strand = Plus / Minus
Query: 13 tactccctccgtcccatattaagtgtcaaaatattacatgtatctagacgttttttaggt 72
|||||||||||||||||||||| || | ||||||||| |||||||| |||||||||
Sbjct: 121 tactccctccgtcccatattaaatgactttctattacatgcatctagacattttttaggc 62
Query: 73 atagatacatccatctttggacaaatttgagacacttaatatgagatggagggagta 129
|||||||||||||| |||| ||||||||| |||||||||| || ||||||||||
Sbjct: 61 atagatacatccatatttgattaaatttgagtcacttaatataggacggagggagta 5
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 93.7 bits (47), Expect = 6e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 36 tgtcaaaatattacatgtatctagacgttttttaggtatagatacatccatctttggaca 95
|||| |||||||||||||||||||||| |||||||| ||||||||||||| ||||| ||
Sbjct: 28 tgtcgaaatattacatgtatctagacgctttttaggaatagatacatccaattttgggca 87
Query: 96 aatttgagaca 106
|||||||||||
Sbjct: 88 aatttgagaca 98
>RF00906;MIR1122;EU730902.1/55282-55158 15368:Brachypodium
distachyon
Length = 125
Score = 85.7 bits (43), Expect = 1e-16
Identities = 64/71 (90%)
Strand = Plus / Minus
Query: 36 tgtcaaaatattacatgtatctagacgttttttaggtatagatacatccatctttggaca 95
|||| |||||||||||||||||||||| |||||| ||||||||||||||||||| ||
Sbjct: 98 tgtcgaaatattacatgtatctagacgcattttagaaatagatacatccatctttgagca 39
Query: 96 aatttgagaca 106
|||||||||||
Sbjct: 38 aatttgagaca 28
>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
sylvaticum
Length = 124
Score = 85.7 bits (43), Expect = 1e-16
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 36 tgtcaaaatattacatgtatctagacgttttttaggtatagatacatccatctttggaca 95
|||| |||||||||||||||||||||| ||||| | |||||||||||||| ||||| ||
Sbjct: 28 tgtcgaaatattacatgtatctagacgcgttttaagaatagatacatccatatttgggca 87
Query: 96 aatttgagaca 106
|||||||||||
Sbjct: 88 aatttgagaca 98
>RF00906;MIR1122;EU730901.1/58586-58463 15368:Brachypodium
distachyon
Length = 124
Score = 83.8 bits (42), Expect = 6e-16
Identities = 100/118 (84%), Gaps = 1/118 (0%)
Strand = Plus / Minus
Query: 13 tactccctccgtcccatattaagtgtcaaaatattacatgtatctagacgttttttaggt 72
||||| ||||||||||||||||||| | ||||| ||||||||| |||||||||||
Sbjct: 120 tactcgctccgtcccatattaagtgacttcctatta-atgtatctaaacgttttttagcc 62
Query: 73 atagatacatccatctttggacaaatttgagacacttaatatgagatggagggagtat 130
|| |||||||||| | |||||||||||||| ||||||||||| || |||| ||||||
Sbjct: 61 atttatacatccatatctggacaaatttgagtcacttaatatgggacggagagagtat 4
>RF00906;MIR1122;EU730899.1/90906-91030 15368:Brachypodium
distachyon
Length = 125
Score = 83.8 bits (42), Expect = 6e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 41 aaatattacatgtatctagacgttttttaggtatagatacatccatctttggacaaattt 100
||||||||||||||||||||| |||||||| |||||||||| ||| ||||| |||||||
Sbjct: 33 aaatattacatgtatctagacactttttaggaatagatacattcatttttggtcaaattt 92
Query: 101 gagaca 106
||||||
Sbjct: 93 gagaca 98
>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
distachyon
Length = 127
Score = 81.8 bits (41), Expect = 2e-15
Identities = 83/96 (86%), Gaps = 2/96 (2%)
Strand = Plus / Minus
Query: 13 tactccctccgtcccatattaagtgtcaaaatattacatgtatctagacgt--tttttag 70
|||||||||||| ||||| | |||| ||||||||||||||||||||||| |||||||
Sbjct: 123 tactccctccgttccataattcttgtcgaaatattacatgtatctagacgtgttttttag 64
Query: 71 gtatagatacatccatctttggacaaatttgagaca 106
| |||||||||||||| ||||| |||||||||||
Sbjct: 63 gaatagatacatccatttttgggttaatttgagaca 28
>RF00906;MIR1122;EF059989.1/55128-55252 29664:Brachypodium
sylvaticum
Length = 125
Score = 79.8 bits (40), Expect = 9e-15
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 36 tgtcaaaatattacatgtatctagacgttttttaggtatagatacatccatctttggaca 95
|||| |||||||||||||||||||||| |||||| | ||||||| |||||| ||||| ||
Sbjct: 28 tgtcgaaatattacatgtatctagacgctttttaagaatagatatatccatatttgggca 87
Query: 96 aatttgag 103
||||||||
Sbjct: 88 aatttgag 95
>RF00906;MIR1122;EF059989.1/222260-222384 29664:Brachypodium
sylvaticum
Length = 125
Score = 79.8 bits (40), Expect = 9e-15
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 36 tgtcaaaatattacatgtatctagacgttttttaggtatagatacatccatctttggaca 95
|||| |||| |||||||||||||||||||||||| | ||| |||||||||| ||||||||
Sbjct: 98 tgtcgaaatcttacatgtatctagacgttttttatgaatatatacatccatttttggaca 39
Query: 96 aatt 99
||||
Sbjct: 38 aatt 35
>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
distachyon
Length = 125
Score = 77.8 bits (39), Expect = 4e-14
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 36 tgtcaaaatattacatgtatctagacgttttttaggtatagatacatccatctttggaca 95
|||| ||||||| |||||||||| ||| ||||||| |||||||||||||| ||||| ||
Sbjct: 98 tgtcgaaatattgcatgtatctaaacgccttttaggaatagatacatccatttttgggca 39
Query: 96 aatttgagaca 106
|||||||||||
Sbjct: 38 aatttgagaca 28
>RF00906;MIR1122;EU730898.1/54746-54622 15368:Brachypodium
distachyon
Length = 125
Score = 77.8 bits (39), Expect = 4e-14
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 36 tgtcaaaatattacatgtatctagacgttttttaggtatagatacatccatctttggaca 95
|||||||||||||||||||||||||| ||||||| ||||||||||| || |||| ||
Sbjct: 98 tgtcaaaatattacatgtatctagacactttttagaaatagatacatctatttttgagca 39
Query: 96 aatttgagaca 106
|||||||||||
Sbjct: 38 aatttgagaca 28
>RF00906;MIR1122;EU730894.1/121201-121325 15368:Brachypodium
distachyon
Length = 125
Score = 73.8 bits (37), Expect = 6e-13
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 13 tactccctccgtcccatattaagtgtcaaaatattacatgtatctagacgttttttaggt 72
||||||||||| ||||||||| |||| |||||||||||||||||||| | ||||||
Sbjct: 121 tactccctccgacccatattacttgtcgaaatattacatgtatctagatgctttttaaac 62
Query: 73 atagatacatccatctttggacaaatttgagacacttaatatgagatggagggagta 129
|| || |||||||| |||| |||||||| |||| ||||||| | ||||||||||
Sbjct: 61 attgacacatccataattgggcaaatttgtgacaagtaatatgggtcggagggagta 5
>RF00906;MIR1122;EU730895.1/40339-40463 15368:Brachypodium
distachyon
Length = 125
Score = 71.9 bits (36), Expect = 2e-12
Identities = 87/104 (83%)
Strand = Plus / Plus
Query: 12 ctactccctccgtcccatattaagtgtcaaaatattacatgtatctagacgttttttagg 71
|||||||||||| ||||||||| |||| ||||||||||| ||||||| | ||||||
Sbjct: 4 ctactccctccgacccatattacttgtcgaaatattacatttatctagtcactttttaaa 63
Query: 72 tatagatacatccatctttggacaaatttgagacacttaatatg 115
|||||||||| ||| |||| ||||||||||||| |||||||
Sbjct: 64 catagatacattcatatttgatcaaatttgagacaagtaatatg 107
>RF00906;MIR1122;EF059989.1/156495-156619 29664:Brachypodium
sylvaticum
Length = 125
Score = 69.9 bits (35), Expect = 9e-12
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 36 tgtcaaaatattacatgtatctagacgttttttaggtatagatacatccatctttggaca 95
|||| ||||||||||||||||||||| |||||| |||||||||| | | ||||||||
Sbjct: 28 tgtcgaaatattacatgtatctagactctttttacacatagatacattcgtatttggaca 87
Query: 96 aatttgagaca 106
|||||||||||
Sbjct: 88 aatttgagaca 98
>RF00906;MIR1122;EF059989.1/67137-67261 29664:Brachypodium
sylvaticum
Length = 125
Score = 69.9 bits (35), Expect = 9e-12
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 12 ctactccctccgtcccatattaagtgtcaaaatattacatgtatctagacgttttttagg 71
||||||||||||||| |||| | || |||||||||||||||||| ||| |||||| |
Sbjct: 122 ctactccctccgtccggaattacttttcgaaatattacatgtatctaaacgctttttacg 63
Query: 72 tatagatacatccatctttggacaaatttgagaca 106
||| |||||||||| ||||| ||| |||||||||
Sbjct: 62 catatatacatccatatttgggcaattttgagaca 28
>RF00906;MIR1122;EF059989.1/52700-52824 29664:Brachypodium
sylvaticum
Length = 125
Score = 67.9 bits (34), Expect = 3e-11
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 36 tgtcaaaatattacatgtatctagacgttttttaggtatagatacatccatctttggaca 95
|||| |||||||||||||||||||||| |||||| |||||| ||| | | ||||| ||
Sbjct: 28 tgtcgaaatattacatgtatctagacgctttttaaacatagatgcattcgtatttgggca 87
Query: 96 aatttgagacacttaatatgagatggagggagta 129
||||||||||| ||||||| | ||||||||||
Sbjct: 88 aatttgagacaagtaatatgggtcggagggagta 121
>RF00906;MIR1122;EU730898.1/63863-63739 15368:Brachypodium
distachyon
Length = 125
Score = 67.9 bits (34), Expect = 3e-11
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 13 tactccctccgtcccatattaagtgtcaaaatattacatgtatctagacgttttttaggt 72
|||||||||||| ||||| | |||| ||| ||||| |||||||||||| |||||||
Sbjct: 5 tactccctccgttccataattcttgtcgaaacattacgtgtatctagacgctttttagta 64
Query: 73 atagatacatccatctttggacaaatttgagaca 106
|||||||||| || ||||| |||||||||||||
Sbjct: 65 atagatacattcaattttgggcaaatttgagaca 98
>RF00906;MIR1122;EF059989.1/54267-54145 29664:Brachypodium
sylvaticum
Length = 123
Score = 61.9 bits (31), Expect = 2e-09
Identities = 79/94 (84%), Gaps = 2/94 (2%)
Strand = Plus / Minus
Query: 13 tactccctccgtcccatattaagtgtcaaaatattacatgtatctagacgttttttaggt 72
|||||||||||||||||| | ||| |||||||||||||||||||| ||||||
Sbjct: 119 tactccctccgtcccataattctcgtcgaaatattacatgtatctagatatttttttaaa 60
Query: 73 atagatacatccatctttggacaaatttgagaca 106
|||||||||||||| ||||| ||||||||||||
Sbjct: 59 atagatacatccatttttgg--aaatttgagaca 28
>RF00906;MIR1122;EU730901.1/108914-109038 15368:Brachypodium
distachyon
Length = 125
Score = 61.9 bits (31), Expect = 2e-09
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 36 tgtcaaaatattacatgtatctagacgttttttaggtatagatacatccatctttggaca 95
|||| |||| |||||||||||||||| |||||| | |||||||||||||| |||| ||
Sbjct: 98 tgtcgaaatcttacatgtatctagacactttttatgaatagatacatccatttttgagca 39
Query: 96 aatttgagaca 106
| |||||||||
Sbjct: 38 actttgagaca 28
>RF00906;MIR1122;EU730899.1/99199-99323 15368:Brachypodium
distachyon
Length = 125
Score = 61.9 bits (31), Expect = 2e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 36 tgtcaaaatattacatgtatctagacgttttttaggtatagatacatccatctttggaca 95
|||| ||||||||||||||||||||| | ||| |||||||||||||| ||||| ||
Sbjct: 28 tgtcgaaatattacatgtatctagacacctcgaaggaatagatacatccatttttgggca 87
Query: 96 aatttgagaca 106
|||||||||||
Sbjct: 88 aatttgagaca 98
>RF00906;MIR1122;EU730901.1/65072-65195 15368:Brachypodium
distachyon
Length = 124
Score = 54.0 bits (27), Expect = 5e-07
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 36 tgtcaaaatattacatgtatctagacgttttttaggtatagatacatccatctttggaca 95
|||| |||||||| ||||||||||||| |||||| |||||||||||| ||||| ||
Sbjct: 28 tgtcgaaatattatatgtatctagacg-tttttacacatagatacatccgcatttgggca 86
Query: 96 aatttgagaca 106
|||||||||||
Sbjct: 87 aatttgagaca 97
>RF00906;MIR1122;EU730894.1/127135-127259 15368:Brachypodium
distachyon
Length = 125
Score = 54.0 bits (27), Expect = 5e-07
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 36 tgtcaaaatattacatgtatctagacgttttttaggtatagatacatccatctttggaca 95
|||| ||||||||||||||||||||| |||||| ||||||||| | | ||||| ||
Sbjct: 28 tgtcgaaatattacatgtatctagacactttttacacgtagatacattcgtatttgggca 87
Query: 96 aatttgagaca 106
|||||||||||
Sbjct: 88 aatttgagaca 98
>RF00906;MIR1122;EU730902.1/30283-30160 15368:Brachypodium
distachyon
Length = 124
Score = 52.0 bits (26), Expect = 2e-06
Identities = 96/118 (81%), Gaps = 1/118 (0%)
Strand = Plus / Minus
Query: 13 tactccctccgtcccatattaagtgtcaaaatattacatgtatctagacgttttttaggt 72
||||||||||||| |||| | |||| |||||| | ||| ||||| ||| |||||||
Sbjct: 120 tactccctccgtctcataattcttgtcgaaatatcagatgcatctaaacgctttttagaa 61
Query: 73 atagatacatccatctttggacaaatttgagacacttaatatgagatggagggagtat 130
|||| |||||| || ||||| ||||||||||||| | ||||| |||||||||||||
Sbjct: 60 atagctacatc-atttttgggcaaatttgagacaagaattatgaaatggagggagtat 4
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 50 atgtatctagacgttttttaggtatagatacatccat 86
||||||||||| || |||||| |||||||||||||||
Sbjct: 42 atgtatctagatgtattttagttatagatacatccat 78
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 50 atgtatctagacgttttttaggtatagatacatccat 86
||||||||||| || |||||| |||||||||||||||
Sbjct: 42 atgtatctagatgtattttagttatagatacatccat 78
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 50 atgtatctagacgttttttaggtatagatacatccat 86
|||||||||||||| |||||| | |||||||||||||
Sbjct: 84 atgtatctagacgtattttagttctagatacatccat 48
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 50 atgtatctagacgttttttaggtatagatacatccat 86
||||||||||| || |||||| |||||||||||||||
Sbjct: 74 atgtatctagatgtattttagttatagatacatccat 38
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 50 atgtatctagacgttttttaggtatagatacatccat 86
|||||||||||||| |||||| | |||||||||||||
Sbjct: 42 atgtatctagacgtattttagttctagatacatccat 78
>RF00906;MIR1122;EU660894.1/143713-143848 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 56/64 (87%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 36 tgtcaaaatattacatgtatctagacgttttttagg-tatagatacatccatctttggac 94
||||||||||| | |||||||||||| | |||||| ||||| ||||||||| |||||||
Sbjct: 39 tgtcaaaatat-atatgtatctagacatgttttagtatataggtacatccatttttggac 97
Query: 95 aaat 98
||||
Sbjct: 98 aaat 101
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 50 atgtatctagacgttttttaggtatagatacatcca 85
|||||||||||| | |||||| ||||||||||||||
Sbjct: 83 atgtatctagacttattttagttatagatacatcca 48
>RF00906;MIR1122;EU730896.1/41625-41750 15368:Brachypodium
distachyon
Length = 126
Score = 46.1 bits (23), Expect = 1e-04
Identities = 78/95 (82%), Gaps = 1/95 (1%)
Strand = Plus / Minus
Query: 13 tactccctccgtcccatattaagtgtcaaaatattacatgtatctagacgttttttaggt 72
|||||||||||| ||||| | |||| |||||||||| ||||||||| ||||| ||
Sbjct: 122 tactccctccgttccataattcttgtctcaatattacatatatctagacactttttcgga 63
Query: 73 atagatacatccatctttgga-caaatttgagaca 106
||| |||||||||| ||| | |||||||||||||
Sbjct: 62 ataaatacatccatttttttatcaaatttgagaca 28
>RF01058;MIR806;AAAA02017693.1/1498-1741 39946:Oryza sativa Indica
Group
Length = 244
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgtcccatattaagtgt 38
||||||||||||||||| ||||||||
Sbjct: 2 tactccctccgtcccattttaagtgt 27
>RF01058;MIR806;AACV01003457.1/7153-7393 39947:Oryza sativa Japonica
Group
Length = 241
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgtcccatattaagtgt 38
||||||||||||||||| ||||||||
Sbjct: 240 tactccctccgtcccattttaagtgt 215
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 44.1 bits (22), Expect = 5e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 50 atgtatctagacgttttttaggtatagatacatccatctttg 91
|||||||||||| | |||||| | ||||||||||||| ||||
Sbjct: 74 atgtatctagacatattttagttctagatacatccatttttg 33
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 50 atgtatctagacgttttttaggtatagatacatc 83
|||||||||||||| |||||| | ||||||||||
Sbjct: 74 atgtatctagacgtattttagttctagatacatc 41
>RF00906;MIR1122;AY643843.1/31186-31309 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 50 atgtatctagacgttttttaggtatagatacatc 83
|||||||||||| | |||||| ||||||||||||
Sbjct: 83 atgtatctagacttattttagttatagatacatc 50
>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 99 ttgagacacttaatatgagatggagggagtatat 132
|||||||| ||| | |||||||||||||||||||
Sbjct: 35 ttgagacagttattttgagatggagggagtatat 2
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 10 aactactccctccgtcccatattaagtgtc 39
||||||||||||||||||| | ||||||||
Sbjct: 2 aactactccctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;DQ445236.1/8526-8403 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 53 tatctagacgttttttaggtatagatacatccat 86
||||||||| | |||||| |||||||||||||||
Sbjct: 80 tatctagacttattttagttatagatacatccat 47
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 93 acaaatttgagacacttaatatgagatggagggagtat 130
||||| |||||||||||| | || ||||||||||||||
Sbjct: 72 acaaagttgagacacttattttgggatggagggagtat 109
>RF00906;MIR1122;AAAA02003711.1/12163-12287 39946:Oryza sativa
Indica Group
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 aaactactccctccgtcccata 30
||||||||||||||||||||||
Sbjct: 1 aaactactccctccgtcccata 22
>RF00906;MIR1122;AAAA02023828.1/150-266 39946:Oryza sativa Indica
Group
Length = 117
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ctactccctccgtcccatatta 33
||||||||||||||||||||||
Sbjct: 4 ctactccctccgtcccatatta 25
