miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730901.1/65072-65195 15368:Brachypodium
distachyon
Length = 124
Score = 129 bits (65), Expect = 1e-29
Identities = 104/116 (89%), Gaps = 2/116 (1%)
Strand = Plus / Plus
Query: 21 tactcactccagtcggaattacttgttgaaatattacgtgtatctagacggttttttaca 80
||||| |||| ||| ||||||||||| ||||||||| |||||||||||| ||||||||
Sbjct: 5 tactccctccggtcagaattacttgtcgaaatattatatgtatctagacg--tttttaca 62
Query: 81 catagatacgtccgtatttgggcaaatttgagacaagtaattccgatcggagggag 136
||||||||| |||| |||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 63 catagatacatccgcatttgggcaaatttgagacaagtaataccggtcggagggag 118
>RF00906;MIR1122;EU730894.1/127135-127259 15368:Brachypodium
distachyon
Length = 125
Score = 117 bits (59), Expect = 5e-26
Identities = 93/103 (90%), Gaps = 1/103 (0%)
Strand = Plus / Plus
Query: 34 cggaattacttgttgaaatattacgtgtatctagacggttttttacacatagatacgtcc 93
||||||||||||| |||||||||| ||||||||||| ||||| |||| ||||||| | |
Sbjct: 18 cggaattacttgtcgaaatattacatgtatctagacacttttt-acacgtagatacattc 76
Query: 94 gtatttgggcaaatttgagacaagtaattccgatcggagggag 136
|||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 77 gtatttgggcaaatttgagacaagtaataccggtcggagggag 119
>RF00906;MIR1122;EF059989.1/156495-156619 29664:Brachypodium
sylvaticum
Length = 125
Score = 103 bits (52), Expect = 7e-22
Identities = 98/112 (87%), Gaps = 1/112 (0%)
Strand = Plus / Plus
Query: 21 tactcactccagtcggaattacttgttgaaatattacgtgtatctagacggttttttaca 80
||||| |||| || |||||| ||||| |||||||||| ||||||||||| |||| ||||
Sbjct: 5 tactctctccggttggaattgcttgtcgaaatattacatgtatctagactctttt-taca 63
Query: 81 catagatacgtccgtatttgggcaaatttgagacaagtaattccgatcggag 132
||||||||| | ||||||||| ||||||||||||||||||| ||| ||||||
Sbjct: 64 catagatacattcgtatttggacaaatttgagacaagtaataccggtcggag 115
>RF00906;MIR1122;EF059989.1/52700-52824 29664:Brachypodium
sylvaticum
Length = 125
Score = 101 bits (51), Expect = 3e-21
Identities = 79/87 (90%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 35 ggaattacttgttgaaatattacgtgtatctagacggttttttacacatagatacgtccg 94
|||||||||||| |||||||||| |||||||||||| ||||| | |||||||| | | ||
Sbjct: 19 ggaattacttgtcgaaatattacatgtatctagacgctttttaa-acatagatgcattcg 77
Query: 95 tatttgggcaaatttgagacaagtaat 121
|||||||||||||||||||||||||||
Sbjct: 78 tatttgggcaaatttgagacaagtaat 104
>RF00906;MIR1122;EF059989.1/67137-67261 29664:Brachypodium
sylvaticum
Length = 125
Score = 93.7 bits (47), Expect = 7e-19
Identities = 90/103 (87%), Gaps = 1/103 (0%)
Strand = Plus / Minus
Query: 34 cggaattacttgttgaaatattacgtgtatctagacggttttttacacatagatacgtcc 93
||||||||||| | |||||||||| |||||||| ||| ||||| || |||| |||| |||
Sbjct: 108 cggaattacttttcgaaatattacatgtatctaaacgcttttt-acgcatatatacatcc 50
Query: 94 gtatttgggcaaatttgagacaagtaattccgatcggagggag 136
||||||||||| ||||||||||||||| ||| ||||||||||
Sbjct: 49 atatttgggcaattttgagacaagtaataccggtcggagggag 7
>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
sylvaticum
Length = 124
Score = 75.8 bits (38), Expect = 2e-13
Identities = 82/94 (87%), Gaps = 2/94 (2%)
Strand = Plus / Plus
Query: 43 ttgttgaaatattacgtgtatctagacggttttttacacatagatacgtccgtatttggg 102
|||| |||||||||| |||||||||||| |||| | | |||||||| ||| ||||||||
Sbjct: 27 ttgtcgaaatattacatgtatctagacgcgttttaaga-atagatacatccatatttggg 85
Query: 103 caaatttgagacaagtaattccgatcggagggag 136
||||||||||||||| |||| ||||||||||||
Sbjct: 86 caaatttgagacaag-aatttagatcggagggag 118
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 69.9 bits (35), Expect = 1e-11
Identities = 69/79 (87%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 38 attacttgttgaaatattacgtgtatctagacggttttttacacatagatacgtccgtat 97
|||| |||| |||||||||| |||||||||||| ||||| | ||||||||| ||| |||
Sbjct: 104 attagttgtcgaaatattacatgtatctagacgcttttt-aggcatagatacatccatat 46
Query: 98 ttgggcaaatttgagacaa 116
||||||||||||||||||
Sbjct: 45 ctgggcaaatttgagacaa 27
>RF00906;MIR1122;EU730895.1/40339-40463 15368:Brachypodium
distachyon
Length = 125
Score = 63.9 bits (32), Expect = 6e-10
Identities = 87/104 (83%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 38 attacttgttgaaatattacgtgtatctagacggttttttacacatagatacgtccgtat 97
||||||||| |||||||||| | ||||||| | ||||| | |||||||||| | | |||
Sbjct: 22 attacttgtcgaaatattacatttatctagtcactttttaa-acatagatacattcatat 80
Query: 98 ttgggcaaatttgagacaagtaattccgatcggagggagcagca 141
||| ||||||||||||||||||| |||||||||||| ||||
Sbjct: 81 ttgatcaaatttgagacaagtaatatggatcggagggagtagca 124
>RF00906;MIR1122;EU730894.1/121201-121325 15368:Brachypodium
distachyon
Length = 125
Score = 63.9 bits (32), Expect = 6e-10
Identities = 72/84 (85%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 38 attacttgttgaaatattacgtgtatctagacggttttttacacatagatacgtccgtat 97
||||||||| |||||||||| |||||||||| | ||||| | |||| || || ||| ||
Sbjct: 104 attacttgtcgaaatattacatgtatctagatgctttttaa-acattgacacatccataa 46
Query: 98 ttgggcaaatttgagacaagtaat 121
||||||||||||| ||||||||||
Sbjct: 45 ttgggcaaatttgtgacaagtaat 22
>RF00906;MIR1122;EF059989.1/55128-55252 29664:Brachypodium
sylvaticum
Length = 125
Score = 61.9 bits (31), Expect = 2e-09
Identities = 65/75 (86%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 43 ttgttgaaatattacgtgtatctagacggttttttacacatagatacgtccgtatttggg 102
|||| |||||||||| |||||||||||| ||||| | | ||||||| ||| ||||||||
Sbjct: 27 ttgtcgaaatattacatgtatctagacgctttttaaga-atagatatatccatatttggg 85
Query: 103 caaatttgagacaag 117
|||||||||| ||||
Sbjct: 86 caaatttgagtcaag 100
>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
distachyon
Length = 127
Score = 58.0 bits (29), Expect = 4e-08
Identities = 66/77 (85%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 42 cttgttgaaatattacgtgtatctagacg-gttttttacacatagatacgtccgtatttg 100
||||| |||||||||| |||||||||||| |||||||| |||||||| ||| | ||||
Sbjct: 102 cttgtcgaaatattacatgtatctagacgtgttttttaggaatagatacatccatttttg 43
Query: 101 ggcaaatttgagacaag 117
|| |||||||||||||
Sbjct: 42 ggttaatttgagacaag 26
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 49 aaatattacgtgtatctagacggttttttacacatagatacgtccgtatttgggcaaatt 108
||||||||| |||||||| ||| ||||| | ||||||||| ||| |||||||| |||||
Sbjct: 33 aaatattacatgtatctaaacgcttttt-aggcatagatacatccatatttgggaaaatt 91
Query: 109 tgagacaa 116
||||||||
Sbjct: 92 tgagacaa 99
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 65/76 (85%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 42 cttgttgaaatattacgtgtatctagacggttttttacacatagatacgtccgtatttgg 101
||||| |||||||||| |||||||||||| ||||| | |||||||| ||| |||||
Sbjct: 26 cttgtcgaaatattacatgtatctagacgctttttagga-atagatacatccaattttgg 84
Query: 102 gcaaatttgagacaag 117
||||||||||||||||
Sbjct: 85 gcaaatttgagacaag 100
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 56.0 bits (28), Expect = 1e-07
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 48 gaaatattacgtgtatctagacggttttttacacatagatacgtccgtatttgggcaaat 107
|||||||||| |||||||||| | ||||| | |||||||| ||| |||||||||||||
Sbjct: 93 gaaatattacatgtatctagatgcttttt-aggtatagatacatccatatttgggcaaat 35
Query: 108 ttgagaca 115
||||||||
Sbjct: 34 ttgagaca 27
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 52.0 bits (26), Expect = 2e-06
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 83 tagatacgtccgtatttgggcaaatttgagacaagtaattccgatcggagggag 136
||||||| ||||||| | | ||||||| ||||||||||||| || |||||||||
Sbjct: 60 tagatacatccgtatctagacaaatttaagacaagtaattcagaacggagggag 7
>RF00906;MIR1122;EU730902.1/55282-55158 15368:Brachypodium
distachyon
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 48 gaaatattacgtgtatctagacggttttttacacatagatacgtccgtatttgggcaaat 107
|||||||||| |||||||||||| |||| | | |||||||| ||| | |||| ||||||
Sbjct: 94 gaaatattacatgtatctagacgcatttt-agaaatagatacatccatctttgagcaaat 36
Query: 108 ttgagacaag 117
||||||||||
Sbjct: 35 ttgagacaag 26
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 48/54 (88%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 49 aaatattacgtgtatctagacggttttttacacatagatacgtccgtatttggg 102
||||||||| ||||||||||| |||||||| ||||||||| ||| ||||||||
Sbjct: 83 aaatattacatgtatctagac-gttttttatgcatagatacatccatatttggg 31
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 50.1 bits (25), Expect = 9e-06
Identities = 53/61 (86%), Gaps = 1/61 (1%)
Strand = Plus / Minus
Query: 52 tattacgtgtatctagacggttttttacacatagatacgtccgtatttgggcaaatttga 111
|||||| ||||||||||| | |||||| ||||||||| ||| ||||||| |||||||||
Sbjct: 90 tattacatgtatctagac-gctttttaagcatagatacatccatatttggacaaatttga 32
Query: 112 g 112
|
Sbjct: 31 g 31
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 50.1 bits (25), Expect = 9e-06
Identities = 53/61 (86%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 52 tattacgtgtatctagacggttttttacacatagatacgtccgtatttgggcaaatttga 111
|||||| ||||||||||| |||||| |||||||||| ||| ||||||| |||||||||
Sbjct: 36 tattacatgtatctagac-actttttagacatagatacatccatatttggacaaatttga 94
Query: 112 g 112
|
Sbjct: 95 g 95
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 109 tgagacaagtaattccgatcggagggag 136
|||||||||||||||||| |||||||||
Sbjct: 82 tgagacaagtaattccgaacggagggag 109
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 110 gagacaagtaattccgatcggagggag 136
||||||||||||||||| |||||||||
Sbjct: 33 gagacaagtaattccgaacggagggag 7
>RF00906;MIR1122;EU730899.1/90906-91030 15368:Brachypodium
distachyon
Length = 125
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 42 cttgttgaaatattacgtgtatctagac 69
|||||||||||||||| |||||||||||
Sbjct: 26 cttgttgaaatattacatgtatctagac 53
>RF00906;MIR1122;EU730899.1/99199-99323 15368:Brachypodium
distachyon
Length = 125
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 82 atagatacgtccgtatttgggcaaatttgagacaag 117
|||||||| ||| | |||||||||||||||||||||
Sbjct: 65 atagatacatccatttttgggcaaatttgagacaag 100
>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
distachyon
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 82 atagatacgtccgtatttgggcaaatttgagacaa 116
|||||||| ||| | ||||||||||||||||||||
Sbjct: 61 atagatacatccatttttgggcaaatttgagacaa 27
>RF00906;MIR1122;EU730898.1/63863-63739 15368:Brachypodium
distachyon
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 42 cttgttgaaatattacgtgtatctagacggttttt 76
||||| |||| |||||||||||||||||| |||||
Sbjct: 26 cttgtcgaaacattacgtgtatctagacgcttttt 60
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 107 tttgagacaagtaattccgatcggagggag 136
||||||||||||||||| || |||||||||
Sbjct: 36 tttgagacaagtaattcggaacggagggag 7
