miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730901.1/108914-109038 15368:Brachypodium
distachyon
Length = 125
Score = 133 bits (67), Expect = 1e-30
Identities = 103/115 (89%)
Strand = Plus / Plus
Query: 73 ctccctccgttccataatttttgtctcaaattcaaccaaaaatggatgtatctaatctta 132
||||||||||||||||||| |||||||||| | |||||||||||||||||| || ||
Sbjct: 7 ctccctccgttccataattcttgtctcaaagttgctcaaaaatggatgtatctattcata 66
Query: 133 caaagtgtctagatacatgtaagattccgacaagaattatggaacgaagggagta 187
||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 67 aaaagtgtctagatacatgtaagatttcgacaagaattatggaacggcgggagta 121
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 161 gacaagaattatggaacgaagggagta 187
|||||||||||||||||| ||||||||
Sbjct: 31 gacaagaattatggaacggagggagta 5
>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
distachyon
Length = 127
Score = 129 bits (65), Expect = 2e-29
Identities = 107/120 (89%), Gaps = 2/120 (1%)
Strand = Plus / Plus
Query: 73 ctccctccgttccataatttttgtctcaaattcaaccaaaaatggatgtatctaatctta 132
||||||||||||||||||| |||||||||||| | ||||||||||||||||||| || ||
Sbjct: 7 ctccctccgttccataattcttgtctcaaattaacccaaaaatggatgtatctattccta 66
Query: 133 caaa--gtgtctagatacatgtaagattccgacaagaattatggaacgaagggagtacta 190
||| |||||||||||||||| ||| ||||||||||||||||||| |||||||||||
Sbjct: 67 aaaaacacgtctagatacatgtaatatttcgacaagaattatggaacggagggagtacta 126
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 161 gacaagaattatggaacgaagggagta 187
|||||||||||||||||| ||||||||
Sbjct: 31 gacaagaattatggaacggagggagta 5
>RF00906;MIR1122;EU730899.1/90906-91030 15368:Brachypodium
distachyon
Length = 125
Score = 127 bits (64), Expect = 7e-29
Identities = 103/116 (88%)
Strand = Plus / Minus
Query: 73 ctccctccgttccataatttttgtctcaaattcaaccaaaaatggatgtatctaatctta 132
|||||||||||| |||||| |||||||||||| |||||||||| ||||||||| || ||
Sbjct: 119 ctccctccgttcgataattcttgtctcaaatttgaccaaaaatgaatgtatctattccta 60
Query: 133 caaagtgtctagatacatgtaagattccgacaagaattatggaacgaagggagtac 188
||||||||||||||||||||| ||| | |||||||||||| |||| |||||||||
Sbjct: 59 aaaagtgtctagatacatgtaatatttcaacaagaattatgaaacggagggagtac 4
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 121 bits (61), Expect = 4e-27
Identities = 94/105 (89%)
Strand = Plus / Minus
Query: 73 ctccctccgttccataatttttgtctcaaattcaaccaaaaatggatgtatctaatctta 132
||||||||||||||||||| |||||||||||| |||||| |||||||||||| || ||
Sbjct: 119 ctccctccgttccataattcttgtctcaaatttgcccaaaattggatgtatctattccta 60
Query: 133 caaagtgtctagatacatgtaagattccgacaagaattatggaac 177
|||| |||||||||||||||| ||| ||||||||||||||||||
Sbjct: 59 aaaagcgtctagatacatgtaatatttcgacaagaattatggaac 15
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 161 gacaagaattatggaacgaagggagta 187
|||||||||||||||||| ||||||||
Sbjct: 95 gacaagaattatggaacggagggagta 121
>RF00906;MIR1122;EU730899.1/99199-99323 15368:Brachypodium
distachyon
Length = 125
Score = 119 bits (60), Expect = 2e-26
Identities = 102/116 (87%)
Strand = Plus / Minus
Query: 73 ctccctccgttccataatttttgtctcaaattcaaccaaaaatggatgtatctaatctta 132
|||| |||||||||||||| |||||||||||| ||||||||||||||||||| || |
Sbjct: 119 ctccttccgttccataattcttgtctcaaatttgcccaaaaatggatgtatctattcctt 60
Query: 133 caaagtgtctagatacatgtaagattccgacaagaattatggaacgaagggagtac 188
| | |||||||||||||||||| ||| ||||||||||||||||||| ||| |||||
Sbjct: 59 cgaggtgtctagatacatgtaatatttcgacaagaattatggaacggaggaagtac 4
>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
distachyon
Length = 125
Score = 115 bits (58), Expect = 3e-25
Identities = 94/106 (88%)
Strand = Plus / Plus
Query: 73 ctccctccgttccataatttttgtctcaaattcaaccaaaaatggatgtatctaatctta 132
|||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||
Sbjct: 7 ctccctccgttccataatttttgtctcaaatttgcccaaaaatggatgtatctattccta 66
Query: 133 caaagtgtctagatacatgtaagattccgacaagaattatggaacg 178
|| | || |||||||||| || ||| |||||||||||||||||||
Sbjct: 67 aaaggcgtttagatacatgcaatatttcgacaagaattatggaacg 112
>RF00906;MIR1122;EF059989.1/54267-54145 29664:Brachypodium
sylvaticum
Length = 123
Score = 97.6 bits (49), Expect = 6e-20
Identities = 100/116 (86%), Gaps = 2/116 (1%)
Strand = Plus / Plus
Query: 73 ctccctccgttccataatttttgtctcaaattcaaccaaaaatggatgtatctaatctta 132
||||||||||| ||||||| |||||||||||| ||||||||||||||||||| | | |
Sbjct: 7 ctccctccgtttcataattcttgtctcaaattt--ccaaaaatggatgtatctattttaa 64
Query: 133 caaagtgtctagatacatgtaagattccgacaagaattatggaacgaagggagtac 188
||| | ||||||||||||||| ||| |||| |||||||||| ||| |||||||||
Sbjct: 65 aaaaatatctagatacatgtaatatttcgacgagaattatgggacggagggagtac 120
>RF00906;MIR1122;EF059989.1/222260-222384 29664:Brachypodium
sylvaticum
Length = 125
Score = 95.6 bits (48), Expect = 3e-19
Identities = 96/112 (85%)
Strand = Plus / Plus
Query: 76 cctccgttccataatttttgtctcaaattcaaccaaaaatggatgtatctaatcttacaa 135
|||||||| ||||||| ||| ||| |||| |||||||||||||||| || || || ||
Sbjct: 10 cctccgtttcataattcttggctcgaatttgtccaaaaatggatgtatatattcataaaa 69
Query: 136 agtgtctagatacatgtaagattccgacaagaattatggaacgaagggagta 187
| |||||||||||||||||||| |||||||||||||| |||| ||||||||
Sbjct: 70 aacgtctagatacatgtaagatttcgacaagaattatgaaacggagggagta 121
>RF00906;MIR1122;EU730898.1/54746-54622 15368:Brachypodium
distachyon
Length = 125
Score = 93.7 bits (47), Expect = 1e-18
Identities = 98/115 (85%)
Strand = Plus / Plus
Query: 73 ctccctccgttccataatttttgtctcaaattcaaccaaaaatggatgtatctaatctta 132
||||||||||| ||||||| |||||||||||| ||||||| |||||||||| | ||
Sbjct: 7 ctccctccgtttcataattcttgtctcaaatttgctcaaaaatagatgtatctatttcta 66
Query: 133 caaagtgtctagatacatgtaagattccgacaagaattatggaacgaagggagta 187
||||||||||||||||||||| ||| ||||||||||||| |||| || |||||
Sbjct: 67 aaaagtgtctagatacatgtaatattttgacaagaattatgaaacggagtgagta 121
>RF00906;MIR1122;EU730896.1/41625-41750 15368:Brachypodium
distachyon
Length = 126
Score = 91.7 bits (46), Expect = 4e-18
Identities = 98/114 (85%), Gaps = 1/114 (0%)
Strand = Plus / Plus
Query: 77 ctccgttccataatttttgtctcaaa-ttcaaccaaaaatggatgtatctaatcttacaa 135
||||||||||||||| |||||||||| || | |||||||||||||| || || | ||
Sbjct: 11 ctccgttccataattcttgtctcaaatttgataaaaaaatggatgtatttattccgaaaa 70
Query: 136 agtgtctagatacatgtaagattccgacaagaattatggaacgaagggagtact 189
|||||||||||| |||||| ||| |||||||||||||||||| ||||||||||
Sbjct: 71 agtgtctagatatatgtaatattgagacaagaattatggaacggagggagtact 124
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 73 ctccctccgttccataatttttgtctcaa 101
||||||||||||||||||| |||||||||
Sbjct: 120 ctccctccgttccataattcttgtctcaa 92
>RF00906;MIR1122;EU730898.1/63863-63739 15368:Brachypodium
distachyon
Length = 125
Score = 89.7 bits (45), Expect = 2e-17
Identities = 97/113 (85%), Gaps = 1/113 (0%)
Strand = Plus / Minus
Query: 76 cctccgttccataattttt-gtctcaaattcaaccaaaaatggatgtatctaatcttaca 134
||||||||||||||||||| |||||||||| |||||| || ||||||||| | || |
Sbjct: 117 cctccgttccataattttttgtctcaaatttgcccaaaattgaatgtatctattactaaa 58
Query: 135 aagtgtctagatacatgtaagattccgacaagaattatggaacgaagggagta 187
||| ||||||||||| |||| || ||||||||||||||||||| ||||||||
Sbjct: 57 aagcgtctagatacacgtaatgtttcgacaagaattatggaacggagggagta 5
>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
sylvaticum
Length = 124
Score = 75.8 bits (38), Expect = 2e-13
Identities = 86/102 (84%)
Strand = Plus / Minus
Query: 88 aatttttgtctcaaattcaaccaaaaatggatgtatctaatcttacaaagtgtctagata 147
|||| |||||||||||| ||||| ||||||||||||| ||||| || | |||||||||
Sbjct: 104 aattcttgtctcaaatttgcccaaatatggatgtatctattcttaaaacgcgtctagata 45
Query: 148 catgtaagattccgacaagaattatggaacgaagggagtact 189
||||||| ||| |||||| |||| ||| || ||||||||||
Sbjct: 44 catgtaatatttcgacaataatttaggatcggagggagtact 3
>RF00906;MIR1122;EU730902.1/55282-55158 15368:Brachypodium
distachyon
Length = 125
Score = 69.9 bits (35), Expect = 1e-11
Identities = 92/111 (82%)
Strand = Plus / Plus
Query: 77 ctccgttccataatttttgtctcaaattcaaccaaaaatggatgtatctaatcttacaaa 136
||||||| ||||||| |||||||||||| |||| ||||||||||||| | || ||
Sbjct: 11 ctccgtttcataattcttgtctcaaatttgctcaaagatggatgtatctatttctaaaat 70
Query: 137 gtgtctagatacatgtaagattccgacaagaattatggaacgaagggagta 187
| |||||||||||||||| ||| ||||| |||||| | |||| ||||||||
Sbjct: 71 gcgtctagatacatgtaatatttcgacatgaattacgaaacggagggagta 121
>RF00906;MIR1122;EF059989.1/55128-55252 29664:Brachypodium
sylvaticum
Length = 125
Score = 61.9 bits (31), Expect = 4e-09
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 108 ccaaaaatggatgtatctaatcttacaaagtgtctagatacatgtaagattccgacaaga 167
||||| |||||| |||||| ||||| |||| |||||||||||||||| ||| |||||| |
Sbjct: 84 ccaaatatggatatatctattcttaaaaagcgtctagatacatgtaatatttcgacaaca 25
Query: 168 att 170
|||
Sbjct: 24 att 22
>RF00906;MIR1122;AM180263.1/1164-1082 4513:Hordeum vulgare
Length = 83
Score = 54.0 bits (27), Expect = 9e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 160 cgacaagaattatggaacgaagggagtacta 190
||||||||||||||||||| |||||||||||
Sbjct: 32 cgacaagaattatggaacggagggagtacta 2
>RF00906;MIR1122;EU730895.1/40339-40463 15368:Brachypodium
distachyon
Length = 125
Score = 54.0 bits (27), Expect = 9e-07
Identities = 93/115 (80%)
Strand = Plus / Minus
Query: 73 ctccctccgttccataatttttgtctcaaattcaaccaaaaatggatgtatctaatctta 132
||||||||| |||||| | |||||||||||| | |||| ||| ||||||||| |||
Sbjct: 119 ctccctccgatccatattacttgtctcaaatttgatcaaatatgaatgtatctatgttta 60
Query: 133 caaagtgtctagatacatgtaagattccgacaagaattatggaacgaagggagta 187
|||||| ||||||| |||||| ||| ||||||| | ||||| || ||||||||
Sbjct: 59 aaaagtgactagataaatgtaatatttcgacaagtaatatgggtcggagggagta 5
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 54.0 bits (27), Expect = 9e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 108 ccaaaaatggatgtatctaatcttacaaagtgtctagatacatgtaa 154
||||| ||||||||||||| |||| |||| ||||||||||||||||
Sbjct: 42 ccaaatatggatgtatctatgcttaaaaagcgtctagatacatgtaa 88
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 54.0 bits (27), Expect = 9e-07
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 93 ttgtctcaaattcaaccaaaaatggatgtatctaatcttacaaagtgtctagatacatgt 152
|||||||||||| ||| | ||||||||||||| | || |||| ||||||||||||||
Sbjct: 27 ttgtctcaaatttgcccagatatggatgtatctatgcctaaaaagcgtctagatacatgt 86
Query: 153 aagattccgacaagaattatggaacgaagggagta 187
|| ||| |||||| | |||||| || ||||||||
Sbjct: 87 aatatttcgacaactaatatggatcggagggagta 121
>RF00906;MIR1122;EU730894.1/127135-127259 15368:Brachypodium
distachyon
Length = 125
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 134 aaagtgtctagatacatgtaagattccgacaag 166
||||||||||||||||||||| ||| |||||||
Sbjct: 58 aaagtgtctagatacatgtaatatttcgacaag 26
>RF00906;MIR1122;EU730902.1/30283-30160 15368:Brachypodium
distachyon
Length = 124
Score = 48.1 bits (24), Expect = 5e-05
Identities = 94/116 (81%), Gaps = 1/116 (0%)
Strand = Plus / Plus
Query: 73 ctccctccgttccataatttttgtctcaaattcaaccaaaaatggatgtatctaatctta 132
|||||||| || ||||||| |||||||||||| |||||||| |||||| ||| | ||
Sbjct: 7 ctccctccatttcataattcttgtctcaaatttgcccaaaaat-gatgtagctatttcta 65
Query: 133 caaagtgtctagatacatgtaagattccgacaagaattatggaacgaagggagtac 188
|||| || ||||| ||| | | ||| |||||||||||||| ||| |||||||||
Sbjct: 66 aaaagcgtttagatgcatctgatatttcgacaagaattatgagacggagggagtac 121
>RF00906;MIR1122;X73528.1/281-181 4565:Triticum aestivum (bread
wheat)
Length = 101
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 161 gacaagaattatggaacgaagggagta 187
|||||||||| ||||||||||||||||
Sbjct: 31 gacaagaattttggaacgaagggagta 5
>RF00906;MIR1122;AK252407.1/1225-1338 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 160 cgacaagaattatggaacgaagggagtacta 190
||||||||||||| ||||| |||||||||||
Sbjct: 32 cgacaagaattattgaacggagggagtacta 2
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 46.1 bits (23), Expect = 2e-04
Identities = 77/95 (81%)
Strand = Plus / Minus
Query: 93 ttgtctcaaattcaaccaaaaatggatgtatctaatcttacaaagtgtctagatacatgt 152
|||||||||||| ||||| ||||||||||||| | || |||| || |||||||||||
Sbjct: 99 ttgtctcaaattttcccaaatatggatgtatctatgcctaaaaagcgtttagatacatgt 40
Query: 153 aagattccgacaagaattatggaacgaagggagta 187
|| ||| ||||| | |||||| || ||||||||
Sbjct: 39 aatattttgacaattaatatggatcggagggagta 5
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 46.1 bits (23), Expect = 2e-04
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 94 tgtctcaaattcaaccaaaaatggatgtatctaatcttacaaagtgtctagatacatgta 153
||||||||||| ||||| ||||||||||||| | || |||| ||||||||||||||
Sbjct: 27 tgtctcaaatttgcccaaatatggatgtatctatacctaaaaagcatctagatacatgta 86
Query: 154 agattccgaca 164
| ||| |||||
Sbjct: 87 atatttcgaca 97
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 46.1 bits (23), Expect = 2e-04
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 108 ccaaaaatggatgtatctaatcttacaaagtgtctagatacatgtaa 154
||||| ||||||||||||| || |||||||||||||||||||||
Sbjct: 84 ccaaatatggatgtatctatgtctaaaaagtgtctagatacatgtaa 38
>RF00906;MIR1122;EF059989.1/365637-365513 29664:Brachypodium
sylvaticum
Length = 125
Score = 44.1 bits (22), Expect = 8e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 97 ctcaaattcaaccaaaaatggatgtatctaatcttacaaagtgtctagatacatgtaa 154
|||||||| || |||| ||||||||||||| | || ||| ||||||||| |||||||
Sbjct: 31 ctcaaatttaatcaaatatggatgtatctatgcctaaaaaatgtctagatgcatgtaa 88
