miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 77.8 bits (39), Expect = 3e-14
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 33 aatattacatgtatctagacgtttgnnnnnnntagatacattcatttttgggcaaatttg 92
||||||||||||||||||||| || ||||||||| || |||||||||||||||
Sbjct: 34 aatattacatgtatctagacgctttttaggaatagatacatccaattttgggcaaatttg 93
Query: 93 ggacaagaattatgaaacggaggtagta 120
||||||||||||| |||||||| ||||
Sbjct: 94 agacaagaattatggaacggagggagta 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 atactccctccgttccataattc 32
|||||||||||||||||||||||
Sbjct: 122 atactccctccgttccataattc 100
>RF00906;MIR1122;EU730899.1/99199-99323 15368:Brachypodium
distachyon
Length = 125
Score = 75.8 bits (38), Expect = 1e-13
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 65 tagatacattcatttttgggcaaatttgggacaagaattatgaaacggaggtagtaca 122
||||||||| |||||||||||||||||| ||||||||||||| |||||| | ||||||
Sbjct: 66 tagatacatccatttttgggcaaatttgagacaagaattatggaacggaaggagtaca 123
>RF00906;MIR1122;EF059989.1/222260-222384 29664:Brachypodium
sylvaticum
Length = 125
Score = 73.8 bits (37), Expect = 5e-13
Identities = 97/120 (80%), Gaps = 7/120 (5%)
Strand = Plus / Minus
Query: 8 taatactccctccgttccataattc-------aatattacatgtatctagacgtttgnnn 60
|||||||||||||||| |||||||| ||| ||||||||||||||||||||
Sbjct: 124 taatactccctccgtttcataattcttgtcgaaatcttacatgtatctagacgtttttta 65
Query: 61 nnnntagatacattcatttttgggcaaatttgggacaagaattatgaaacggaggtagta 120
|| |||||| ||||||||| |||||| | | |||||||||||||||||||||||||
Sbjct: 64 tgaatatatacatccatttttggacaaattcgagccaagaattatgaaacggaggtagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 94 gacaagaattatgaaacggaggtagta 120
|||||||||||||||||||||| ||||
Sbjct: 95 gacaagaattatgaaacggagggagta 121
>RF00906;MIR1122;EU730899.1/90906-91030 15368:Brachypodium
distachyon
Length = 125
Score = 71.9 bits (36), Expect = 2e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 65 tagatacattcatttttgggcaaatttgggacaagaattatgaaacggaggtagta 120
||||||||||||||||||| |||||||| |||||||||||| |||||||| ||||
Sbjct: 66 tagatacattcatttttggtcaaatttgagacaagaattatcgaacggagggagta 121
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 95 acaagaattatgaaacggaggtagtaca 122
||||||||||||||||||||| ||||||
Sbjct: 30 acaagaattatgaaacggagggagtaca 3
>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
distachyon
Length = 125
Score = 71.9 bits (36), Expect = 2e-12
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 65 tagatacattcatttttgggcaaatttgggacaagaattatgaaacggaggtagta 120
||||||||| |||||||||||||||||| ||||| ||||||| |||||||| ||||
Sbjct: 60 tagatacatccatttttgggcaaatttgagacaaaaattatggaacggagggagta 5
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 atactccctccgttccataatt 31
||||||||||||||||||||||
Sbjct: 4 atactccctccgttccataatt 25
>RF00906;MIR1122;EU730898.1/54746-54622 15368:Brachypodium
distachyon
Length = 125
Score = 71.9 bits (36), Expect = 2e-12
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 65 tagatacattcatttttgggcaaatttgggacaagaattatgaaacggaggtagta 120
||||||||| ||||||| ||||||||| |||||||||||||||||||||| ||||
Sbjct: 60 tagatacatctatttttgagcaaatttgagacaagaattatgaaacggagggagta 5
>RF00906;MIR1122;EU730902.1/30283-30160 15368:Brachypodium
distachyon
Length = 124
Score = 69.9 bits (35), Expect = 8e-12
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 74 tcatttttgggcaaatttgggacaagaattatgaaacggaggtagta 120
||||||||||||||||||| |||||||||||||||| ||||| ||||
Sbjct: 51 tcatttttgggcaaatttgagacaagaattatgaaatggagggagta 5
>RF00906;MIR1122;EU730902.1/55282-55158 15368:Brachypodium
distachyon
Length = 125
Score = 67.9 bits (34), Expect = 3e-11
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 65 tagatacattcatttttgggcaaatttgggacaagaattatgaaacggag 114
||||||||| ||| |||| ||||||||| |||||||||||||||||||||
Sbjct: 60 tagatacatccatctttgagcaaatttgagacaagaattatgaaacggag 11
>RF00906;MIR1122;EF059989.1/54267-54145 29664:Brachypodium
sylvaticum
Length = 123
Score = 67.9 bits (34), Expect = 3e-11
Identities = 52/57 (91%), Gaps = 2/57 (3%)
Strand = Plus / Minus
Query: 65 tagatacattcatttttgggcaaatttgggacaagaattatgaaacggaggtagtac 121
||||||||| ||||||||| ||||||| |||||||||||||||||||||| |||||
Sbjct: 58 tagatacatccatttttgg--aaatttgagacaagaattatgaaacggagggagtac 4
>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
distachyon
Length = 127
Score = 65.9 bits (33), Expect = 1e-10
Identities = 96/119 (80%), Gaps = 9/119 (7%)
Strand = Plus / Minus
Query: 11 tactccctccgttccataattc-------aatattacatgtatctagacgt--ttgnnnn 61
|||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 123 tactccctccgttccataattcttgtcgaaatattacatgtatctagacgtgttttttag 64
Query: 62 nnntagatacattcatttttgggcaaatttgggacaagaattatgaaacggaggtagta 120
||||||||| |||||||||| |||||| ||||||||||||| |||||||| ||||
Sbjct: 63 gaatagatacatccatttttgggttaatttgagacaagaattatggaacggagggagta 5
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tactccctccgttccataattc 32
||||||||||||||||||||||
Sbjct: 5 tactccctccgttccataattc 26
>RF00906;MIR1122;EU730901.1/108914-109038 15368:Brachypodium
distachyon
Length = 125
Score = 63.9 bits (32), Expect = 5e-10
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 65 tagatacattcatttttgggcaaatttgggacaagaattatgaaacggaggtagta 120
||||||||| |||||||| |||| |||| ||||||||||||| |||||||| ||||
Sbjct: 60 tagatacatccatttttgagcaactttgagacaagaattatggaacggagggagta 5
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tactccctccgttccataattc 32
||||||||||||||||||||||
Sbjct: 5 tactccctccgttccataattc 26
>RF00906;MIR1122;EU730898.1/63863-63739 15368:Brachypodium
distachyon
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 47/52 (90%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 65 tagatacattcatttttgggcaaatttgggac-aagaattatgaaacggagg 115
|||||||||||| ||||||||||||||| ||| || ||||||| ||||||||
Sbjct: 66 tagatacattcaattttgggcaaatttgagacaaaaaattatggaacggagg 117
>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
sylvaticum
Length = 124
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 65 tagatacattcatttttgggcaaatttgggacaagaatt 103
||||||||| ||| |||||||||||||| ||||||||||
Sbjct: 66 tagatacatccatatttgggcaaatttgagacaagaatt 104
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 33 aatattacatgtatctagacgttt 56
||||||||||||||||||||||||
Sbjct: 82 aatattacatgtatctagacgttt 59
>RF00906;MIR1122;EU730894.1/127135-127259 15368:Brachypodium
distachyon
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 65 tagatacattcatttttgggcaaatttgggacaag 99
||||||||||| | |||||||||||||| ||||||
Sbjct: 66 tagatacattcgtatttgggcaaatttgagacaag 100
>RF00906;MIR1122;AM180263.1/1164-1082 4513:Hordeum vulgare
Length = 83
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tactccctccgttccataattc 32
||||||||||||||||||||||
Sbjct: 5 tactccctccgttccataattc 26
>RF00906;MIR1122;EF059989.1/226094-226187 29664:Brachypodium
sylvaticum
Length = 94
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 8 taatactccctccgttccataa 29
||||||||||||||||||||||
Sbjct: 93 taatactccctccgttccataa 72
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 33 aatattacatgtatctagacgt 54
||||||||||||||||||||||
Sbjct: 34 aatattacatgtatctagacgt 55
>RF00906;MIR1122;EU730896.1/41625-41750 15368:Brachypodium
distachyon
Length = 126
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 85 caaatttgggacaagaattatgaaacggag 114
|||||||| ||||||||||||| |||||||
Sbjct: 40 caaatttgagacaagaattatggaacggag 11
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgttccataattc 32
||||||||||||||||||||||
Sbjct: 122 tactccctccgttccataattc 101
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 35 tattacatgtatctagacgttt 56
||||||||||||||||||||||
Sbjct: 36 tattacatgtatctagacgttt 57
