miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730902.1/34504-34625 15368:Brachypodium
distachyon
Length = 122
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 33 ctccctccgtccaaaaataagtgacttggatttgtata 70
|||||||||||| ||||||||||| ||||||||||||
Sbjct: 7 ctccctccgtcccgaaataagtgacgtggatttgtata 44
>RF00906;MIR1122;EU730899.1/86003-86096 15368:Brachypodium
distachyon
Length = 94
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 35 ccctccgtccaaaaataagtgacttggatttgtataaattcttttacaaa 84
|||||||||| ||||||||||| |||||||||||| ||| || ||||||
Sbjct: 86 ccctccgtcccaaaataagtgatgtggatttgtatagatttttatacaaa 37
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 46 aaaataagtgacttggatttgtataaa 72
|||||||||||| ||||||||||||||
Sbjct: 20 aaaataagtgacatggatttgtataaa 46
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 31 tactccctccgtccaaaaataagtgact 58
|||||||||||||| |||||||||||||
Sbjct: 112 tactccctccgtcccaaaataagtgact 85
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 31 tactccctccgtccaaaaataagtgact 58
|||||||||||||| |||||||||||||
Sbjct: 111 tactccctccgtcccaaaataagtgact 84
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 31 tactccctccgtccaaaaataagtgact 58
|||||||||||||| |||||||||||||
Sbjct: 100 tactccctccgtcccaaaataagtgact 73
>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 31 tactccctccgtccaaaaataagtgact 58
|||||||||||||| |||||||||||||
Sbjct: 111 tactccctccgtcccaaaataagtgact 84
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 31 tactccctccgtccaaaaataagtgact 58
|||||||||||||| |||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgact 32
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 29 attactccctccgtccaaaaataagtg 55
|||||||||||||||| ||||||||||
Sbjct: 3 attactccctccgtcccaaaataagtg 29
>RF00906;MIR1122;AAAA02036701.1/2179-2075 39946:Oryza sativa Indica
Group
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 27 taattactccctccgtccaaaaa 49
|||||||||||||||||||||||
Sbjct: 105 taattactccctccgtccaaaaa 83
>RF00906;MIR1122;AAAA02005577.1/25167-25025 39946:Oryza sativa
Indica Group
Length = 143
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 27 taattactccctccgtccaaaaa 49
|||||||||||||||||||||||
Sbjct: 1 taattactccctccgtccaaaaa 23
>RF01058;MIR806;AAAA02014927.1/5775-5532 39946:Oryza sativa Indica
Group
Length = 244
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 30 ttactccctccgtccaaaaataagtg 55
||||||||||||||| ||||||||||
Sbjct: 1 ttactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AP008214.1/5532426-5532666 39947:Oryza sativa
Japonica Group
Length = 241
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 30 ttactccctccgtccaaaaataagtg 55
||||||||||||||| ||||||||||
Sbjct: 241 ttactccctccgtcccaaaataagtg 216
>RF01058;MIR806;AP004672.3/126730-126486 39947:Oryza sativa
Japonica Group
Length = 245
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 30 ttactccctccgtccaaaaataagtg 55
||||||||||||||| ||||||||||
Sbjct: 1 ttactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AACV01005022.1/1990-2230 39947:Oryza sativa Japonica
Group
Length = 241
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 30 ttactccctccgtccaaaaataagtg 55
||||||||||||||| ||||||||||
Sbjct: 241 ttactccctccgtcccaaaataagtg 216
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 31 tactccctccgtccaaaaataagtgacttg 60
|||||||||||||| |||||||||| ||||
Sbjct: 5 tactccctccgtcccaaaataagtgtcttg 34
>RF00906;MIR1122;DQ537336.1/120340-120474 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 31 tactccctccgtccaaaaataa 52
||||||||||||||||||||||
Sbjct: 131 tactccctccgtccaaaaataa 110
>RF00906;MIR1122;AB182945.1/6773-6906 4565:Triticum aestivum
(bread wheat)
Length = 134
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 34 tccctccgtccaaaaataagtgacttggatttgt 67
||||||||||| ||||| |||| |||||||||||
Sbjct: 8 tccctccgtcccaaaatgagtgtcttggatttgt 41
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 31 tactccctccgtccaaaaataagtgacttg 60
|||||||||||||| |||||||||| ||||
Sbjct: 5 tactccctccgtcccaaaataagtgtcttg 34
>RF00906;MIR1122;AAAA02006274.1/40977-41091 39946:Oryza sativa
Indica Group
Length = 115
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 aattactccctccgtccaaaaa 49
||||||||||||||||||||||
Sbjct: 2 aattactccctccgtccaaaaa 23
